Aleš Berlec

Dr. Aleš Berlec

Jozef Stefan Institute, Ljubljana, Slovenia
orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 November 2020 in Microorganisms
Verified
Journal Article
Open access
PDF file
SSSpase Stojanov
Spase Stojanov
ABAleš Berlec
Aleš Berlec
BŠBorut Štrukelj
Borut Štrukelj
The two most important bacterial phyla in the gastrointestinal tract, Firmicutes and Bacteroidetes, have gained much attention in recent years. The Firmicutes/Bacteroidetes (F/B) ratio is widely accepted to have an important influence in maintaining normal intestinal homeostasis. Increased or decreased F/B ratio is regarded as dysbiosis, whereby the former is usually observed with obesity, and the latter with inflammatory bowel disease (IBD). Probiotics as live microorganisms can confer health benefits to the host when administered in adequate amounts. There is considerable evidence of their nutritional and immunosuppressive properties including reports that elucidate the association of probiotics with the F/B ratio, obesity, and IBD. Orally administered probiotics can contribute to the restoration of dysbiotic microbiota and to the prevention of obesity or IBD. However, as the effects of different probiotics on the F/B ratio differ, selecting the appropriate species or mixture is crucial. The most commonly tested probiotics for modifying the F/B ratio and treating obesity and IBD are from the genus Lactobacillus. In this paper, we review the effects of probiotics on the F/B ratio that lead to weight loss or immunosuppression.

1 August 1996 in Cell
Verified
Journal Article
Closed access
PMPetr Maly
Petr Maly
ATAron D Thall
Aron D Thall
BPBronislawa Petryniak
Bronislawa Petryniak
CRClare E Rogers
Clare E Rogers
PSPeter L Smith
Peter L Smith
JLJohn B Lowe
John B Lowe

1 September 1995 in Journal of Biological Chemistry
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Journal Article
Open access
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ATAron D. Thall
Aron D. Thall
PMPetr Maly
Petr Maly
JLJohn B. Lowe
John B. Lowe
The Galα13Gal structure is displayed on the zona pellucida glycoprotein ZP3 on murine oocytes. This trisaccharide has been implicated in sperm-zona pellucida adhesive events thought to be essential to fertilization in the mouse. To determine directly if this molecule is required for fertilization, we have generated mice that are deficient in a gene (α1,3GT) encoding the UDP-Gal:β-D-Gal-α13Gal-galactosyltransferase enzyme responsible for Galα13Gal synthesis and expression. These mice develop normally and exhibit no gross phenotypic abnormalities. The Galα13Gal epitope is absent from the vascular endothelium and other tissues in α1,3GT (−/−) adult mice. By contrast, α1,3GT (−/−) mice, like humans, develop naturally occurring anti-α-galactoside antibodies normally absent in wild type mice. Female α1,3GT (−/−) mice yield oocytes that are devoid of the Galα13Gal epitope; however, these mice are fully fertile. These observations indicate that the Galα13Gal moiety is not essential to sperm-oocyte interactions leading to fertilization or to essentially normal development. They further suggest that α1,3GT (−/−) mice will find utility for exploring approaches to diminish anti-Gal-dependent hyperacute xenograft rejection, which presents a major barrier to the use of porcine and other non-primate organs for xenotransplantation in humans.

1 July 2001 in Immunity
Verified
Journal Article
Closed access
JHJonathon W Homeister
Jonathon W Homeister
ATAron D Thall
Aron D Thall
BPBronia Petryniak
Bronia Petryniak
PMPetr Maly
Petr Maly
CRClare E Rogers
Clare E Rogers
JLJohn B Lowe
John B Lowe

1 July 2015 in Trends in Biotechnology
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Journal Article
Closed access
KŠKatja Škrlec
Katja Škrlec
BŠBorut Štrukelj
Borut Štrukelj
ABAleš Berlec
Aleš Berlec

1 April 2013 in Journal of Industrial Microbiology and Biotechnology
Verified
Journal Article
Closed access
PDF file
ABAleš Berlec
Aleš Berlec
BŠBorut Štrukelj
Borut Štrukelj
Almost all of the 200 or so approved biopharmaceuticals have been produced in one of three host systems: the bacterium Escherichia coli, yeasts (Saccharomyces cerevisiae, Pichia pastoris) and mammalian cells. We describe the most widely used methods for the expression of recombinant proteins in the cytoplasm or periplasm of E. coli, as well as strategies for secreting the product to the growth medium. Recombinant expression in E. coli influences the cell physiology and triggers a stress response, which has to be considered in process development. Increased expression of a functional protein can be achieved by optimizing the gene, plasmid, host cell, and fermentation process. Relevant properties of two yeast expression systems, S. cerevisiae and P. pastoris, are summarized. Optimization of expression in S. cerevisiae has focused mainly on increasing the secretion, which is otherwise limiting. P. pastoris was recently approved as a host for biopharmaceutical production for the first time. It enables high-level protein production and secretion. Additionally, genetic engineering has resulted in its ability to produce recombinant proteins with humanized glycosylation patterns. Several mammalian cell lines of either rodent or human origin are also used in biopharmaceutical production. Optimization of their expression has focused on clonal selection, interference with epigenetic factors and genetic engineering. Systemic optimization approaches are applied to all cell expression systems. They feature parallel high-throughput techniques, such as DNA microarray, next-generation sequencing and proteomics, and enable simultaneous monitoring of multiple parameters. Systemic approaches, together with technological advances such as disposable bioreactors and microbioreactors, are expected to lead to increased quality and quantity of biopharmaceuticals, as well as to reduced product development times.