Derek Atkinson

Dr. Derek Atkinson

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Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 February 2017 in Neurology
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DADerek Atkinson
Derek Atkinson
JGJelena Nikodinovic Glumac
Jelena Nikodinovic Glumac
BABob Asselbergh
Bob Asselbergh
BEBiljana Ermanoska
Biljana Ermanoska
DBDavid Blocquel
David Blocquel
AJAlbena Jordanova
Albena Jordanova
Objective: To identify the unknown genetic cause in a nuclear family with an axonal form of peripheral neuropathy and atypical disease course. Methods: Detailed neurologic, electrophysiologic, and neuropathologic examinations of the patients were performed. Whole exome sequencing of both affected individuals was done. The effect of the identified sequence variations was investigated at cDNA and protein level in patient-derived lymphoblasts. The plasma sphingoid base profile was analyzed. Functional consequences of neuron-specific downregulation of the gene were studied in Drosophila. Results: Both patients present an atypical form of axonal peripheral neuropathy, characterized by acute or subacute onset and episodes of recurrent mononeuropathy. We identified compound heterozygous mutations cosegregating with disease and absent in controls in the SGPL1 gene, encoding sphingosine 1-phosphate lyase (SPL). The p.Ser361* mutation triggers nonsense-mediated mRNA decay. The missense p.Ile184Thr mutation causes partial protein degradation. The plasma levels of sphingosine 1-phosphate and sphingosine/sphinganine ratio were increased in the patients. Neuron-specific downregulation of the Drosophila orthologue impaired the morphology of the neuromuscular junction and caused progressive degeneration of the chemosensory neurons innervating the wing margin bristles. Conclusions: We suggest SPL deficiency as a cause of a distinct form of Charcot-Marie-Tooth disease in humans, thus extending the currently recognized clinical and genetic spectrum of inherited peripheral neuropathies. Our data emphasize the importance of sphingolipid metabolism for neuronal function.

30 May 2012 in PLOS ONE
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EGEllen Van Gulck
Ellen Van Gulck
LBLotte Bracke
Lotte Bracke
LHLeo Heyndrickx
Leo Heyndrickx
SCSandra Coppens
Sandra Coppens
DADerek Atkinson
Derek Atkinson
GVGuido Vanham
Guido Vanham
Upon interruption of antiretroviral therapy, HIV-infected patients usually show viral load rebound to pre-treatment levels. Four patients, hereafter referred to as secondary controllers (SC), were identified who initiated therapy during chronic infection and, after stopping treatment, could control virus replication at undetectable levels for more than six months. In the present study we set out to unravel possible viral and immune parameters or mechanisms of this phenomenon by comparing secondary controllers with elite controllers and non-controllers, including patients under HAART. As candidate correlates of protection, virus growth kinetics, levels of intracellular viral markers, several aspects of HIV-specific CD4+ and CD8+ T cell function and HIV neutralizing antibodies were investigated. As expected all intracellular viral markers were lower in aviremic as compared to viremic subjects, but in addition both elite and secondary controllers had lower levels of viral unspliced RNA in PBMC as compared to patients on HAART. Ex vivo cultivation of the virus from CD4+ T cells of SC consistently failed in one patient and showed delayed kinetics in the three others. Formal in vitro replication studies of these three viruses showed low to absent growth in two cases and a virus with normal fitness in the third case. T cell responses toward HIV peptides, evaluated in IFN-γ ELISPOT, revealed no significant differences in breadth, magnitude or avidity between SC and all other patient groups. Neither was there a difference in polyfunctionality of CD4+ or CD8+ T cells, as evaluated with intracellular cytokine staining. However, secondary and elite controllers showed higher proliferative responses to Gag and Pol peptides. SC also showed the highest level of autologous neutralizing antibodies. These data suggest that higher T cell proliferative responses and lower replication kinetics might be instrumental in secondary viral control in the absence of treatment.

1 June 2016 in Genetics in Medicine
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Journal Article
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DKDaliya Kancheva
Daliya Kancheva
DADerek Atkinson
Derek Atkinson
PRPeter De Rijk
Peter De Rijk
MZMagdalena Zimon
Magdalena Zimon
TCTeodora Chamova
Teodora Chamova
AJAlbena Jordanova
Albena Jordanova

18 September 2014 in neurogenetics
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MZMagdalena Zimoń
Magdalena Zimoń
EBEsra Battaloğlu
Esra Battaloğlu
YPYesim Parman
Yesim Parman
SESevim Erdem
Sevim Erdem
JBJonathan Baets
Jonathan Baets
AJAlbena Jordanova
Albena Jordanova

19 June 2017 in Brain
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EYEmil Ylikallio
Emil Ylikallio
RWRosa Woldegebriel
Rosa Woldegebriel
MTManuela Tumiati
Manuela Tumiati
PIPirjo Isohanni
Pirjo Isohanni
MRMonique M. Ryan
Monique M. Ryan
HTHenna Tyynismaa
Henna Tyynismaa
Defects in mRNA export from the nucleus have been linked to various neurodegenerative disorders. We report mutations in the gene MCM3AP, encoding the germinal center associated nuclear protein (GANP), in nine affected individuals from five unrelated families. The variants were associated with severe childhood onset primarily axonal (four families) or demyelinating (one family) Charcot-Marie-Tooth neuropathy. Mild to moderate intellectual disability was present in seven of nine affected individuals. The affected individuals were either compound heterozygous or homozygous for different MCM3AP variants, which were predicted to cause depletion of GANP or affect conserved amino acids with likely importance for its function. Accordingly, fibroblasts of affected individuals from one family demonstrated severe depletion of GANP. GANP has been described to function as an mRNA export factor, and to suppress TDP-43-mediated motor neuron degeneration in flies. Thus our results suggest defective mRNA export from nucleus as a potential pathogenic mechanism of axonal degeneration in these patients. The identification of MCM3AP variants in affected individuals from multiple centres establishes it as a disease gene for childhood-onset recessively inherited Charcot-Marie-Tooth neuropathy with intellectual disability.

1 May 2014 in Neurobiology of Disease
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Journal Article
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KJKatrien Janssens
Katrien Janssens
SGSofie Goethals
Sofie Goethals
DADerek Atkinson
Derek Atkinson
BEBiljana Ermanoska
Biljana Ermanoska
EFErik Fransen
Erik Fransen
VTVincent Timmerman
Vincent Timmerman