Nicholas Knowlton

Dr. Nicholas Knowlton

orcid

Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 2008 in Human Reproduction
Verified
Journal Article
Closed access
PDF file
KHKarl R. Hansen
Karl R. Hansen
NKNicholas Knowlton
Nicholas Knowlton
ATAngela C. Thyer
Angela C. Thyer
JCJay S. Charleston
Jay S. Charleston
MSMichael R. Soules
Michael R. Soules
NKNancy A. Klein
Nancy A. Klein
BACKGROUND The primary determinant of reproductive age in women is the number of ovarian non-growing (primordial, intermediate and primary) follicles (NGFs). To better characterize the decline in NGF number associated with aging, we have employed modern stereology techniques to determine NGF number in women from birth to menopause.

1 January 2011 in Fertility and Sterility
Verified
Journal Article
Closed access
KHKarl R. Hansen
Karl R. Hansen
GHGeorge M. Hodnett
George M. Hodnett
NKNicholas Knowlton
Nicholas Knowlton
LCLaTasha B. Craig
LaTasha B. Craig

9 April 2013 in PLOS ONE
Verified
Journal Article
Open access
PDF file
MCMichael Centola
Michael Centola
GCGuy Cavet
Guy Cavet
YSYijing Shen
Yijing Shen
SRSaroja Ramanujan
Saroja Ramanujan
NKNicholas Knowlton
Nicholas Knowlton
JCJeffrey R. Curtis
Jeffrey R. Curtis
Disease activity measurement is a key component of rheumatoid arthritis (RA) management. Biomarkers that capture the complex and heterogeneous biology of RA have the potential to complement clinical disease activity assessment. To develop a multi-biomarker disease activity (MBDA) test for rheumatoid arthritis. Candidate serum protein biomarkers were selected from extensive literature screens, bioinformatics databases, mRNA expression and protein microarray data. Quantitative assays were identified and optimized for measuring candidate biomarkers in RA patient sera. Biomarkers with qualifying assays were prioritized in a series of studies based on their correlations to RA clinical disease activity (e.g. the Disease Activity Score 28-C-Reactive Protein [DAS28-CRP], a validated metric commonly used in clinical trials) and their contributions to multivariate models. Prioritized biomarkers were used to train an algorithm to measure disease activity, assessed by correlation to DAS and area under the receiver operating characteristic curve for classification of low vs. moderate/high disease activity. The effect of comorbidities on the MBDA score was evaluated using linear models with adjustment for multiple hypothesis testing. 130 candidate biomarkers were tested in feasibility studies and 25 were selected for algorithm training. Multi-biomarker statistical models outperformed individual biomarkers at estimating disease activity. Biomarker-based scores were significantly correlated with DAS28-CRP and could discriminate patients with low vs. moderate/high clinical disease activity. Such scores were also able to track changes in DAS28-CRP and were significantly associated with both joint inflammation measured by ultrasound and damage progression measured by radiography. The final MBDA algorithm uses 12 biomarkers to generate an MBDA score between 1 and 100. No significant effects on the MBDA score were found for common comorbidities. We followed a stepwise approach to develop a quantitative serum-based measure of RA disease activity, based on 12-biomarkers, which was consistently associated with clinical disease activity levels.

4 June 2008 in Genes & Immunity
Verified
Journal Article
Open access
PDF file
ASA H Sawalha
A H Sawalha
MJM Jeffries
M Jeffries
RWR Webb
R Webb
QLQ Lu
Q Lu
GGG Gorelik
G Gorelik
BRB Richardson
B Richardson
Systemic lupus erythematosus (SLE) is an autoimmune disease characterized by the production of autoantibodies against a host of nuclear antigens. The pathogenesis of lupus is incompletely understood. Environmental factors may play a role via altering DNA methylation, a mechanism regulating gene expression. In lupus, genes including CD11a and CD70 are overexpressed in T cells as a result of promoter hypomethylation. T-cell DNA methyltransferase expression is regulated in part by the extracellular signal-regulated kinase (ERK) signaling pathway. In this study, we investigate the effects of decreased ERK pathway signaling in T cells using transgenic animals. We generated a transgenic mouse that inducibly expresses a dominant-negative MEK in T cells in the presence of doxycycline. We show that decreased ERK pathway signaling in T cells results in decreased expression of DNA methyltransferase 1 and overexpression of the methylation-sensitive genes CD11a and CD70, similar to T cells in human lupus. Our transgenic animal model also develops anti-dsDNA antibodies. Interestingly, microarray expression assays revealed overexpression of several interferon-regulated genes in the spleen similar to peripheral blood cells of lupus patients. This model supports the contention that ERK pathway signaling defects in T cells contribute to the development of autoimmunity.

14 January 2010 in Blood
Verified
Journal Article
Open access
PDF file
ECEsther Carreras
Esther Carreras
STSean Turner
Sean Turner
MFMark Barton Frank
Mark Barton Frank
NKNicholas Knowlton
Nicholas Knowlton
JOJeanette Osban
Jeanette Osban
SKSUSAN KOVATS
SUSAN KOVATS
During inflammation, elevated granulocyte macrophage–colony-stimulating factor (GM-CSF) directs the development of new dendritic cells (DCs). This pathway is influenced by environmental factors, and we previously showed that physiologic levels of estradiol, acting through estrogen receptor alpha (ERα), promote the GM-CSF–mediated differentiation of a CD11b+ DC subset from myeloid progenitors (MPs). We now have identified interferon regulatory factor 4 (IRF4), a transcription factor induced by GM-CSF and critical for CD11b+ DC development in vivo, as a target of ERα signaling during this process. In MPs, ERα potentiates and sustains GM-CSF induction of IRF4. Furthermore, retroviral delivery of the Irf4 cDNA to undifferentiated ERα−/− bone marrow cells restored the development of the estradiol/ERα-dependent DC population, indicating that an elevated amount of IRF4 protein substitutes for ERα signaling. Thus at an early stage in the MP response to GM-CSF, ERα signaling induces an elevated amount of IRF4, which leads to a developmental program underlying CD11b+ DC differentiation.

19 January 2011 in Arthritis & Rheumatism
Verified
Journal Article
Open access
PDF file
DTDerrick J. Todd
Derrick J. Todd
NKNicholas Knowlton
Nicholas Knowlton
MAMichael Amato
Michael Amato
MFMark Barton Frank
Mark Barton Frank
PSPeter H. Schur
Peter H. Schur
DLDavid M. Lee
David M. Lee
Objective: Serum rheumatoid factor (RF) and other heterophilic antibodies potentially interfere with antibody‐based immunoassays by nonspecifically binding detection reagents. The purpose of this study was to assess whether these factors confound multiplex‐based immunoassays, which are used with increasing frequency to measure cytokine and chemokine analytes in patients with rheumatoid arthritis (RA).Methods: We performed multiplex immunoassays using different platforms to measure analyte concentrations in RA patient samples. Samples were depleted of RF by column‐based affinity absorption or were exposed to agents that block heterophilic binding activity.Results: In RA patients with high‐titer RF, 69% of analytes demonstrated at least a 2‐fold stronger multiplex signal in non–RF‐depleted samples as compared to RF‐depleted samples. This degree of erroneous signal amplification was less frequent in low‐titer RF samples (17% of analytes; P < 0.0000001). Signal amplification by heterophilic antibodies was blocked effectively by HeteroBlock (≥150 μg/ml). In 35 RA patients, multiplex signals for 14 of 22 analytes were amplified erroneously in unblocked samples as compared to blocked samples (some >100‐fold), but only in patients with high‐titer RF (P < 0.002). Two other blocking agents, heterophilic blocking reagent and immunoglobulin‐inhibiting reagent, also blocked heterophilic activity.Conclusion: All multiplex protein detection platforms we tested exhibited significant confounding by RF or other heterophilic antibodies. These findings have broad‐reaching implications in the acquisition and interpretation of data derived from multiplex immunoassay testing of RA patient serum and possibly also in other conditions in which RF or other heterophilic antibodies may be present. Several available blocking agents effectively suppressed this erroneous signal amplification in the multiplex platforms tested.