Ondřej Klempíř

Dr. Ondřej Klempíř

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 August 2024 in Sensors
Verified
Journal Article
Open access
PDF file
OKOndřej Klempíř
Ondřej Klempíř
RKRadim Krupička
Radim Krupička
Advancements in deep learning speech representations have facilitated the effective use of extensive unlabeled speech datasets for Parkinson’s disease (PD) modeling with minimal annotated data. This study employs the non-fine-tuned wav2vec 1.0 architecture to develop machine learning models for PD speech diagnosis tasks, such as cross-database classification and regression to predict demographic and articulation characteristics. The primary aim is to analyze overlapping components within the embeddings on both classification and regression tasks, investigating whether latent speech representations in PD are shared across models, particularly for related tasks. Firstly, evaluation using three multi-language PD datasets showed that wav2vec accurately detected PD based on speech, outperforming feature extraction using mel-frequency cepstral coefficients in the proposed cross-database classification scenarios. In cross-database scenarios using Italian and English-read texts, wav2vec demonstrated performance comparable to intra-dataset evaluations. We also compared our cross-database findings against those of other related studies. Secondly, wav2vec proved effective in regression, modeling various quantitative speech characteristics related to articulation and aging. Ultimately, subsequent analysis of important features examined the presence of significant overlaps between classification and regression models. The feature importance experiments discovered shared features across trained models, with increased sharing for related tasks, further suggesting that wav2vec contributes to improved generalizability. The study proposes wav2vec embeddings as a next promising step toward a speech-based universal model to assist in the evaluation of PD.

1 January 2025 in Computational and Structural Biotechnology Journal
Verified
Journal Article
Open access
OKOndřej Klempíř
Ondřej Klempíř
ASAdela Skryjova
Adela Skryjova
ATAles Tichopad
Ales Tichopad
RKRadim Krupicka
Radim Krupicka
Speech and language technologies are effective tools for identifying the distinct speech changes associated with Parkinson's disease (PD), enabling earlier and more accurate diagnosis. Models leveraging recent advancements in self-supervised speech pretraining, such as Wav2Vec, have demonstrated superior performance over traditional feature extraction methods. While Wav2Vec 2.0 has been successfully utilized for PD detection, a rigorous quantitative comparison with Wav2Vec 1.0 is needed to comprehensively evaluate its advantages, limitations, and applicability across different speech modes in PD. This study presents a systematic comparison of Wav2Vec 1.0 and Wav2Vec 2.0 embeddings across three multilingual datasets using various classification approaches to classify normal (healthy controls; HC) and PD-affected speech. Additionally, both Wav2Vec 1.0 and 2.0 were benchmarked against traditional baseline features across diverse linguistic contexts, including spontaneous speech, non-spontaneous speech, and isolated vowels. A multicriteria TOPSIS approach was employed to rank feature extraction methods, revealing that Wav2Vec 2.0 excelled across speech modes, with its first transformer layer demonstrating the best performance for classifying read text and monologue, and its feature extractor performing best in vowel-based classification. In contrast, Wav2Vec 1.0, while generally outperformed by Wav2Vec 2.0, still provided a more efficient alternative with competitive performance. Finally, we combined selected layers from both architectures and have demonstrated improved diagnostic accuracy in vowel-based classification. This comparative analysis underscores the strengths of both Wav2Vec architectures and informs their optimal use in PD detection.

5 December 2025 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
OKOndřej Klempíř
Ondřej Klempíř
JMJuliana Grand Mullerova
Juliana Grand Mullerova
RKRadim Krupička
Radim Krupička

30 May 2018
Verified
Book Chapter
Closed access
PDF file
OKOndřej Klempíř
Ondřej Klempíř
RKRadim Krupička
Radim Krupička
VPVladimíra Petráková
Vladimíra Petráková
JKJan Krůšek
Jan Krůšek
IDIvan Dittert
Ivan Dittert
ATAndrew Taylor
Andrew Taylor

12 April 2024 in medRxiv
Verified
Preprint
Open access
PDF file
OKOndřej Klempíř
Ondřej Klempíř
RKRadim Krupička
Radim Krupička
Advancements in deep learning speech representations have facilitated the effective use of extensive datasets comprised of unlabeled speech signals, and have achieved success in modeling tasks associated with Parkinson’s disease (PD) with minimal annotated data. This study focuses on PD non-fine-tuned wav2vec 1.0 architecture. Utilizing features derived from wav2vec embedding, we develop machine learning models tailored for clinically relevant PD speech diagnosis tasks, such as cross-database classification and regression to predict demographic and articulation characteristics, for instance, modeling the subjects’ age and number of characters per second. The primary aim is to conduct feature importance analysis on both classification and regression tasks, investigating whether latent discrete speech representations in PD are shared across models, particularly for related tasks. The proposed wav2vec-based models were evaluated on PD versus healthy controls using three multi-language-task PD datasets. Results indicated that wav2vec accurately detected PD based on speech, outperforming feature extraction using mel-frequency cepstral coefficients in the proposed cross-database scenarios. Furthermore, wav2vec proved effective in regression, modeling various quantitative speech characteristics related to intelligibility and aging. Subsequent analysis of important features, obtained using scikit-learn feature importance built-in tools and the Shapley additive explanations method, examined the presence of significant overlaps between classification and regression models. The feature importance experiments discovered shared features across trained models, with increased sharing for related tasks, further suggesting that wav2vec contributes to improved generalizability. In conclusion, the study proposes wav2vec embedding as a promising step toward a speech-based universal model to assist in the evaluation of PD.

31 January 2025 in medRxiv
Verified
Preprint
Open access
PDF file
OKOndřej Klempíř
Ondřej Klempíř
ASAdela Skryjova
Adela Skryjova
ATAleš Tichopád
Aleš Tichopád
RKRadim Krupička
Radim Krupička
Speech and language technologies are effective tools for identifying the distinct speech changes associated with Parkinson’s disease (PD), enabling earlier and more accurate diagnosis. Recent advancements in self-supervised speech pretraining, particularly with Wav2Vec models, have demonstrated superior performance over traditional feature extraction methods. While Wav2Vec 2.0 has been successfully utilized for PD detection, a rigorous quantitative comparison with Wav2Vec 1.0 is needed to comprehensively evaluate its advantages, limitations, and applicability across different speech modes in PD. This study presents a systematic comparison of Wav2Vec 1.0 and Wav2Vec 2.0 embeddings across three multilingual datasets using various classification approaches in classifying normal (healthy controls; HC) and PD speech. Additionally, both Wav2Vec versions were benchmarked against traditional baseline features across diverse linguistic contexts, including spontaneous speech, non-spontaneous speech, and isolated vowels. A multicriteria TOPSIS approach was employed to rank feature extraction methods, revealing that the Wav2Vec 2.0 consistently excelled across all speech modes, with its first transformer layer demonstrating the best performance for contextual tasks (read text and monologue) and its feature extractor performing best in vowel-based classification. In contrast, the Wav2Vec 1.0, while generally outperformed by the Wav2Vec 2.0, still provided a faster alternative with competitive performance in contextual tasks, highlighting its potential for specific applications, such as federated learning. This comparative analysis furthermore underscores the strengths of each Wav2Vec architecture and informs their optimal use in PD detection.