Yoko Shibata

Dr. Yoko Shibata

orcid

Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 July 2009 in Journal of Molecular Biology
Verified
Journal Article
Open access
YSYoko Shibata
Yoko Shibata
JWJim F. White
Jim F. White
MSMaria J. Serrano-Vega
Maria J. Serrano-Vega
FMFrancesca Magnani
Francesca Magnani
AAAmanda L. Aloia
Amanda L. Aloia
CTChristopher G. Tate
Christopher G. Tate
Structural studies on G-protein-coupled receptors have been hampered for many years by their instability in detergent solution and by the number of potential conformations that receptors can adopt. Recently, the structures of the beta(1) and beta(2) adrenergic receptors and the adenosine A(2a) receptor were determined in the antagonist-bound state, a receptor conformation that is thought to be more stable than the agonist-bound state. In contrast to these receptors, the neurotensin (NT) receptor NTS1 is much less stable in detergent solution. We have therefore used a systematic mutational approach coupled with activity assays to identify receptor mutants suitable for crystallization, both alone and in complex with the peptide agonist NT. The best receptor mutant NTS1-7m contained four point mutations. It showed increased stability compared to the wild-type receptor, in the absence of ligand, after solubilization with a variety of detergents. In addition, NTS1-7m bound to NT was more stable than unliganded NTS1-7m. Of the four thermostabilizing mutations, only one residue (A86L) is predicted to be in the lipid environment. In contrast, I260A appears to be buried within the transmembrane helix bundle, F342A may form a distant part of the putative ligand-binding site, whereas F358A is likely to be in a region that is important for receptor activation. NTS1-7m binds NT with a similar affinity for the wild-type receptor. However, agonist dissociation was slower, and NTS1-7m activated G-proteins poorly. The affinity of NTS1-7m for the antagonist SR48692 was also lower than that of the wild-type receptor. Thus, we have successfully stabilized NTS1 in an agonist-binding conformation that does not efficiently couple to G-proteins.

1 May 2021 in Respiratory Investigation
Verified
Journal Article
Closed access
HMHiroshi Mukae
Hiroshi Mukae
TKTakeshi Kaneko
Takeshi Kaneko
YOYasushi Obase
Yasushi Obase
MSMasaharu Shinkai
Masaharu Shinkai
TKToshio Katsunuma
Toshio Katsunuma
JTJun Tamaoki
Jun Tamaoki

1 January 2011 in International Journal of Medical Sciences
Verified
Journal Article
Open access
YSYoko Shibata
Yoko Shibata
TWTetsu Watanabe
Tetsu Watanabe
DODaisuke Osaka
Daisuke Osaka
SAShuichi Abe
Shuichi Abe
SISumito Inoue
Sumito Inoue
IKIsao Kubota
Isao Kubota
Background: Chronic pulmonary disorders, such as chronic obstructive pulmonary disease (COPD) and fibrosing lung diseases, and atrial fibrillation (AF), are prevalent in elderly people. The impact of cardiac co-morbidities in the elderly, where pulmonary function is impaired, cannot be ignored as they influence mortality. The relationship between the prevalence of AF and pulmonary function is unclear. The aim of this study was to evaluate this relationship in participants in a health check.

1 January 2010 in Internal Medicine
Verified
Journal Article
Open access
PDF file
DODaisuke Osaka
Daisuke Osaka
YSYoko Shibata
Yoko Shibata
SAShuichi Abe
Shuichi Abe
SISumito Inoue
Sumito Inoue
YTYoshikane Tokairin
Yoshikane Tokairin
IKIsao Kubota
Isao Kubota
Background Chronic obstructive pulmonary disease (COPD) is characterized by chronic airflow limitation. The prevalence of airflow limitation in Japan is 10.9% (16.4% of males and 5.0% of females). Cigarette smoking is well known as a major cause of COPD. However, few epidemiological studies have evaluated the effects of cigarette smoking on pulmonary function in healthy subjects. Methods Subjects aged 40 years or older (n=2,917), who had participated in a community-based annual health check in Takahata, Japan, from 2004 through 2005, were enrolled in the study. The smoking histories of these subjects were investigated using a self-reported questionnaire. Forced vital capacity (FVC), forced expiratory volume in 1 second (FEV1), and forced expiratory flow at 25-75% of FVC (FEF25-75) were measured by standard procedures using spirometric machines. Results There were 554 current smokers (18.6%) and 403 former smokers (13.8%). The prevalence of airflow limitation defined by FEV1/FVC <0.7 in this population was 10.6%, and prevalence of airflow limitation defined by 5th percentile lower limit of normal was 6.4%. In smokers, percent predicted values of measured spirometric parameters (%FVC, %FEV1 and %FEF25-75) decreased significantly with age, except for male %FVC. Also, percent predicted values of measured spirometric parameters decreased significantly with increasing pack-years, except for female %FEF25-75. Conclusion Cigarette smoking increased the prevalence and severity of airflow limitation. It is concluded that cigarette smoking increases the risk of airflow limitation in a healthy Japanese population.

1 January 2011 in International Journal of Medical Sciences
Verified
Journal Article
Open access
YAYasuko Aida
Yasuko Aida
YSYoko Shibata
Yoko Shibata
DODaisuke Osaka
Daisuke Osaka
SAShuichi Abe
Shuichi Abe
SISumito Inoue
Sumito Inoue
IKIsao Kubota
Isao Kubota
Background: Tissue hypoxia induces the degradation of adenosine triphosphate, resulting in the production of uric acid (UA). Patients with chronic obstructive pulmonary disease (COPD) have been reported to have high serum levels of UA (sUA), compared with control subjects. However, the relationship between sUA levels and spirometric measures has not been investigated in detail in a general population.

20 September 2023 in Respiratory Investigation
Verified
Journal Article
Open access
YSYoko Shibata
Yoko Shibata
TKTomotaka Kawayama
Tomotaka Kawayama
SMShigeo Muro
Shigeo Muro
HSHisatoshi Sugiura
Hisatoshi Sugiura
Chronic obstructive pulmonary disease (COPD) is characterized by airflow obstruction on spirometry and symptoms such as dyspnea on exertion and chronic cough with sputum production, thus making it a significant healthcare issue worldwide. Japanese patients with COPD have unique characteristics compared to patients in Western countries, including older age and lower exacerbation frequency. The Japanese Respiratory Society (JRS) published the 6th edition of the COPD guideline in June 2022. This article introduces the management goals of COPD and describes its management during the stable phase, as outlined in the guideline. Management goals include improving the current status, such as the symptoms, quality of life (QOL), exercise tolerance, and physical activity, and reducing future risks through prevention of exacerbation and suppression of disease progression to prevent shortening of healthy life expectancy. Management plans should include avoidance of causative substances, assessment of disease severity, and personalized treatment plans. Pharmacotherapy using inhalation bronchodilators is a key component of the treatment of stable COPD. Bronchodilators, including short- and long-acting dilators, are commonly used to relieve symptoms and improve QOL. Inhaled corticosteroids (ICSs) are used in combination with long-acting bronchodilators, especially in patients with asthma and COPD overlap, or those experiencing frequent exacerbation of eosinophilia. Combination therapy with a long-acting muscarinic antagonist (LAMA), a long-acting beta 2 agonist (LABA), and ICS is expected to improve QOL and respiratory function and reduce mortality and exacerbation compared to the LAMA + LABA combination. Non-pharmacological therapies, including smoking cessation and pulmonary rehabilitation, should also be considered.