Retired chemically polluted sites in southern Jiangsu Province, China, are characterized by dense nonaqueous phase liquids (DNAPLs) and extremely thick aquifers (>30 m), which pose substantial challenges for determining investigation and remediation depths during redevelopment and exploitation. This study constructed a 2D groundwater transport model using TMVOC to systematically investigate the migration, diffusion, and natural attenuation processes of two typical DNAPLs—1,2-dichloroethane (DCE) and carbon tetrachloride (CTC)—under three scenarios: individual transport, mixed transport, and heterogeneous aquifer conditions, with a simulation period of 35 years. In individual transport scenarios, DCE and CTC showed distinct migration behaviors. DCE achieved a maximum vertical transport distance of 14.01 m and a downstream migration distance of 459.58 m, while CTC reached 13.57 m vertically and 453.51 m downstream. When transported as a mixture, their migration was inhibited: DCE’s vertical and downstream distances decreased to 13.76 m and 440.46 m, respectively; and CTC’s to 13.23 m and 420.32 m, likely due to mutual solvent effects that altered their physicochemical properties such as viscosity and solubility. Under natural attenuation conditions, both DNAPLs ceased downstream transport by the end of the 6th year. DCE concentrations dropped below its risk control value (0.81 mg/L) by the 14th year, and CTC (with a risk control value of 0.23 mg/L) by the 11th year. By the 10th year, DCE’s downstream plume had retreated to 48.65 m, and CTC’s to 0.95 m. In heterogeneous aquifers, vertical upward transport of DCE and CTC increased to 14.82 m and 14.22 m, respectively, due to the partial absence of low-conductivity silt layers, while their downstream distances decreased to 397.99 m and 354.11 m, constrained by low-permeability lenses in the migration path. These quantitative results clarify the dynamic differences in DNAPL transport under varying conditions, highlighting the impacts of multicomponent interactions, natural attenuation, and aquifer heterogeneity. They provide critical references for risk management, scientific determination of remediation depths, and safe exploitation of retired chemically polluted sites with similar hydrogeological characteristics.