Niayesh Shahmohammadi

Dr. Niayesh Shahmohammadi

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Research Focus & Metrics

Academic Career Length

3Years (2024-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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19 August 2024 in Cells
Verified
Journal Article
Open access
PDF file
NSNiayesh Shahmohammadi
Niayesh Shahmohammadi
FKFalguni Khan
Falguni Khan
GJGahyeon Jin
Gahyeon Jin
MKMinji Kwon
Minji Kwon
DLDonghee Lee
Donghee Lee
YKYonggyun Kim
Yonggyun Kim
Orthotospovirus tomatomaculae (tomato spotted wilt virus, TSWV) is transmitted by the western flower thrips, Frankliniella occidentalis. Epoxyoctadecamonoenoic acids (EpOMEs) function as immune-suppressive factors, particularly in insects infected by viral pathogens. These oxylipins are produced by cytochrome P450 monooxygenases (CYPs) and are degraded by soluble epoxide hydrolase (sEH). In this study, we tested the hypothesis that TSWV modulates the EpOME level in the thrips to suppress antiviral responses and enhance its replication. TSWV infection significantly elevated both 9,10-EpOME and 12,13-EpOME levels. Following TSWV infection, the larvae displayed apoptosis in the midgut along with the upregulated expression of four caspase genes. However, the addition of EpOME to the viral treatment notably reduced apoptosis and downregulated caspase gene expressions, which led to a marked increase in TSWV titers. The CYP and sEH genes of F. occidentalis were identified, and their expression manipulation using RNA interference (RNAi) treatments led to significant alternations in the insect’s immune responses and TSWV viral titers. To ascertain which viral factor influences the host EpOME levels, specialized RNAi treatments targeting genes encoded by TSWV were administered to larvae infected with TSWV. These treatments demonstrated that NSS expression is pivotal in manipulating the genes involved in EpOME metabolism. These results indicate that NSs of TSWV are crucially linked with the elevation of host insect EpOME levels and play a key role in suppressing the antiviral responses of F. occidentalis.

7 November 2025 in Journal of General Virology
Verified
Journal Article
Open access
NSNiayesh Shahmohammadi
Niayesh Shahmohammadi
FKFalguni Khan
Falguni Khan
DLDonghee Lee
Donghee Lee
DLDaehong Lee
Daehong Lee
YKYonggyun Kim
Yonggyun Kim
Tomato spotted wilt virus (TSWV) is a highly destructive plant pathogen transmitted by thrips, including Frankliniella occidentalis , in a circulative and propagative manner. To counter viral infections, thrips activate antiviral defences through C20 oxygenated polyunsaturated fatty acids (PUFAs), known as eicosanoids. However, at later stages of infection, C18 PUFAs, including epoxyoctadecamonoenoic acids (EpOMEs), modulate immune responses by preventing excessive and unnecessary activation. Our previous study demonstrated that TSWV elevates EpOME levels in thrips to suppress antiviral responses and enhance viral replication, with its nonstructural protein S (NSs) playing a key role in this process. In this study, we investigated the impact of NSs protein variation on vector immunity and virus–vector interactions. We assessed relative TSWV titres in thrips larvae and examined the role of eicosanoids, specifically 12,13-EpOME and PGE 2 , in regulating viral load and apoptosis. Our results revealed that 12,13-EpOME significantly increased viral titres, whereas PGE 2 reduced the viral accumulation by promoting apoptosis in the vector insect. Phylogenetic analysis identified distinct NSs variations among TSWV isolates, with resistance-breaking (RB) and WT strains, which modulated differential infection patterns in thrips gut tissues, as visualized through fluorescence in situ hybridization. RB strains exhibited significantly higher viral titres, along with increased expression of EpOME biosynthetic gene ( Fo-CYP24 ) and decreasing expression of EpOME degradation gene ( Fo-sEH2 ). Apoptosis assays using the terminal deoxynucleotidyl transferase dUTP nick-end labelling assay further indicated that RB strains suppressed the gut epithelial cell death in thrips by antagonizing a process regulated by PGE 2 . Additionally, in vivo transient expression of the NSs gene in a nontarget insect, Spodoptera exigua , demonstrated the immunosuppressive effects by inducing EpOME level through upregulation of Se-CYP expression and downregulation of Se-sEH expression. Indeed, RB strains suppressed cellular immune responses more effectively than WT strains in S. exigua . These findings provide novel insight into the role of NSs genetic variation in TSWV transmission in the insect vector as well as in the host plants.

22 November 2025 in Cells
Verified
Journal Article
Open access
PDF file
FKFalguni Khan
Falguni Khan
GJGahyeon Jin
Gahyeon Jin
MEMojtaba Esmaeily
Mojtaba Esmaeily
SHShiva Haraji
Shiva Haraji
NSNiayesh Shahmohammadi
Niayesh Shahmohammadi
YKYonggyun Kim
Yonggyun Kim
Hemocytes (insect blood cells) consist of several morphological types and perform a variety of physiological processes, including immune responses. However, we do not know how many cell types are functionally differentiated in hemocytes or how they perform independent physiological processes. To address this fundamental question, we analyzed hemocyte transcripts with a single-cell RNA-sequencing (scRNA-Seq) technique. The hemocytes were collected from larvae of a lepidopteran insect, Spodoptera exigua, in which four different hemocyte types were morphologically recognized. scRNA-Seq discriminated 24 hemocyte clusters based on the transcripts of each cell. The clusters were separated into seven functional groups predicted from the top three highly expressed and annotated genes in each cluster: active protein synthesis (12 clusters), apoptosis (5 clusters), melanization (2 clusters), modulating cell shape (6 clusters), antimicrobial peptide production (9 clusters), calcium homeostasis (8 clusters), and cell repairing (1 cluster). Signal components of Toll/IMD immune pathways were variably expressed among the clusters. Biosynthetic genes associated with oxylipin immune mediators were specifically expressed among the clusters. Immune effectors such as melanization and apoptosis were expressed in specific hemocyte clusters. Specifically expressed genes that discriminate hemocyte types were used to develop fluorescence in situ hybridization (FISH) markers. In addition, five new hemocyte groups, which were not among the four known hemocyte types in the transcript profile, were identified and discriminated with their specific FISH markers. The hemocyte clusters underwent dynamic changes upon immune challenge. A trajectory analysis using the transcriptome suggests at least three different hemocyte differentiation pathways. These results indicate that the hemocytes of S. exigua are functionally highly differentiated and exhibit a dynamic transition in response to environmental changes.

7 June 2025 in Viruses
Verified
Journal Article
Open access
PDF file
FKFalguni Khan
Falguni Khan
EBEticha Abdisa Bayisa
Eticha Abdisa Bayisa
NSNiayesh Shahmohammadi
Niayesh Shahmohammadi
YKYonggyun Kim
Yonggyun Kim
Tomato spotted wilt virus (TSWV) is a highly destructive plant pathogen and transmitted by several thrips including the western flower thrips, Frankliniella occidentalis. A structural N protein encoded in the viral genome represents the nucleocapsid protein by binding to the viral RNA genome. However, it remains unknown how the RNA-binding protein specifically interacts with the viral RNA from host RNAs in the target cells. To study the molecular basis of N function, we produced the protein in Escherichia coli and the resulting purified recombinant protein was used to investigate the protein–RNA interactions. The recombinant N protein migrated on agarose gel to the anode in the electric field due to its high basic isoelectric point. This electrostatic property led N protein to bind to DNA as well as RNA. It also bound to both single-stranded (ssRNA) and double-stranded RNA (dsRNA). However, when the total RNA was extracted from plant tissues collected from TSWV-infected host, the RNA extract using the recombinant N protein was much richer in the TSWV genome compared to that without the protein. To investigate the specificity of N protein to ssRNA, the three-dimensional structure was predicted using the AlphaFold program and showed its trimeric oligomerization with the binding pocket for ssRNA. This was supported by the differential susceptibility of N protein with ssRNA and dsRNA against RNase attack. Furthermore, a thermal shift assay to analyze the RNA and protein interaction showed that ssRNA strongly interacted with N protein compared to dsRNA. In addition, the N gene was expressed along with the multiplication of the viral RNA genome segments from the segment-specific fluorescence in situ hybridization analysis in different tissues during different developmental stages of the virus-infected F. occidentalis. These results suggest that the functional trimeric N proteins bind to the viral RNA to form a basic nucleocapsid structure at a specific virus-replicating compartment within the host cells.

4 June 2026 in Insects
Verified
Journal Article
Open access
PDF file
FKFalguni Khan
Falguni Khan
TSTaegeun Song
Taegeun Song
AVAnders Vik
Anders Vik
NSNiayesh Shahmohammadi
Niayesh Shahmohammadi
YKYonggyun Kim
Yonggyun Kim
EpOMEs suppress excessive and unnecessary immune responses at late infection stage in insects. This immune resolvin activity of EpOMEs includes the cell lysis of hemocytes by causing apoptosis. This cytolytic toxicity of EpOMEs suggests a potential insecticidal activity of their stable analogs. In fact, a propoxy derivative of 12,13-EpOME called AS56 mimicked EpOME activity by suppressing immune responses and exhibited insecticidal activity against a lepidopteran insect, Spodoptera exigua. This study evaluated the potency of the EpOME analogs by modifying their functional groups. PD28 is a racemic mixture of propoxy analog at the twelfth carbon. FD25 is a racemic butoxy mixture at the twelfth carbon of AS56. AS61 is saturated at the ninth carbon of AS56. The effects of the EpOME analogs were assessed on two cellular immune responses: hemocyte-spreading and nodule formation. All four analogs inhibited the cellular immune responses; however, AS56 was the most potent in inhibiting the immune responses. FD25 and AS61 were significantly less potent compared to AS56, suggesting crucial roles of the double bond at the ninth carbon and the propoxy chain at the twelfth carbon. The stronger inhibitory activity of AS56 compared to PD28 also suggests the functional role of the stereoisomeric form in physiological functions. The cytotoxicity of AS56 was also the most potent among the analogs, suggesting its insecticidal activity. Subsequent insecticidal bioassays on AS56 toxicity were performed against different insect species. These EpOME analogs were potent against lepidopteran insects (S. exigua and Plutella xylostella) but not against coleopteran (Tenebrio molitor) or thysanopteran (Frankliniella occidentalis) species. Among the EpOME analogs, AS56 was the most toxic against the lepidopteran insects. Spraying AS56 in cabbage fields infested by lepidopteran insects led to acute and high control efficacy against two lepidopteran pests, similar to that of a chemical insecticide, fluxametamide. The AS56-intoxicated larvae exhibited over-excitation in their behavior around 12 h post-treatment. This study indicates that AS56 exhibits an oral toxicity against lepidopteran insects with its cytotoxicity and behavioral over-excitation.

5 May 2025 in Preprints.org
Verified
Preprint
Open access
PDF file
FKFalguni Khan
Falguni Khan
EBEticha Abdisa Bayisa
Eticha Abdisa Bayisa
NSNiayesh Shahmohammadi
Niayesh Shahmohammadi
YKYonggyun Kim
Yonggyun Kim
Tomato spotted wilt virus (TSWV) is a highly destructive plant pathogen and transmitted by several thrips including the western flower thrips, Frankliniella occidentalis. A structural N protein encoded in the viral genome represents the nucleocapsid protein by binding to the viral RNA genome. However, it remains unknown how the RNA-binding protein specifically interacts with the viral RNA from host RNAs in the target cells. To study the molecular basis of N function, we produced the protein in Escherichia coli and the resulting purified recombinant protein was used to investigate the protein-RNA interactions. The recombinant N protein migrated on agarose gel to anode in the electric field due to its high basic isoelectric point. This electrostatic property led N protein to bind to DNA as well as RNA. It also bound to both single-stranded (ssRNA) and double-stranded RNA (dsRNA). However, when the total RNA was extracted from plant tissues collected from TSWV-infected host, the RNA extract using the recombinant N protein was much rich in TSWV genome compared to that without the protein. To investigate the specificity of N protein to ssRNA, three-dimensional structure was predicted using AlphaFold program and showed its trimeric oligomerization with the binding pocket for ssRNA. This was supported by the differential susceptibility of N protein with ssRNA and dsRNA against RNase attack. Furthermore, a thermal shift assay to analyze the RNA and protein interaction showed that ssRNA strongly interacted with N protein compared to dsRNA. In addition, the N gene was expressed along with the multiplication of the viral RNA genome segments from the segment-specific fluorescence in situ hybridization analysis in different tissues during different developmental stages of the virus-infected F. occidentalis. These results suggest that the functional trimeric N proteins bind to the viral RNA to form a basic nucleocapsid structure at a specific virus-replicating compartment within the host cells.