Exchangeable aluminum (Al) ions released from acidic soils with pH < 5.5 inhibit root elongation of crops, ultimately leading to yield reduced. It is necessary to identify the quantitative trait locus (QTLs) and candidate genes that confer toxicity resistance to understand the mechanism and improve tolerance of rapeseed. In this study, an F₂ segregating population was derived from a cross between Al-tolerance inbred line FDH188 (R178) and -sensitive inbred line FDH152 (S169), and the F_2:3 were used as materials to map QTLs associated with the relative elongation of taproot (RET) under Al toxicity stress. Based on bulked segregant analysis sequencing (BSA-seq), three QTLs (qAT-A07-1, qAT-A07-2, and qAT-A09-1) were detected as significantly associated with RET, and 656 candidate genes were screened. By combined BSA and RNA-seq analysis, 55 candidate genes showed differentially expressed, including genes encoding ABC transporter G (ABCG), zinc finger protein, NAC, ethylene-responsive transcription factor (ERF), etc. These genes were probably positive factors in coping with Al toxicity stress in rapeseed. This study provides new insight into exploring the QTLs and candidate genes’ response to Al toxicity stress by combined BSA-seq and RNA-seq and is helpful to further research on the mechanism of Al resistance in rapeseed.

Taro (Colocasia esculenta (L.) Schott) is a tropical tuber crop whose underground corms are used as an important staple food. However, due to a lack of molecular markers, the genetic diversity, germplasm identification, and molecular breeding of taro are greatly limited. In this study, high-density InDel-SSR molecular markers covering the whole genome were developed based on the resequencing data of taro core germplasm. A total of 1,805,634 InDel-SSR loci were identified, and 219 highly polymorphic markers with an average polymorphism information content PIC value of 0.428 were screened. Furthermore, a genetic diversity analysis of 121 taro germplasm resources was conducted based on 219 markers, dividing the resources into three groups. In addition, an association analysis showed that, of the multiple InDel-SSR markers, g13.52 and g12.82 were significantly associated with leaf area and average cormel weight, respectively; the candidate genes CeARF17 (EVM0014444) and CeGA20ox (EVM0001890) were related to cormel expansion; and we excavated the candidate genes CeXXT2 (EVM0016820) and CeLOG1 (EVM0017064), which regulate leaf development. The InDel-SSRs and candidate genes identified in this study are expected to provide important support for genetically improving and breeding new varieties of taro.

Anthocyanins can enhance the nutritional and market value of Dioscorea alata L. They are synthesized in a tissue-specific manner in the peel and flesh of tubers in some Dioscorea alata L. varieties, yet the regulatory mechanisms behind this remain unclear. In order to identify the genes involved in anthocyanin synthesis between the skin and flesh of D. alata, three varieties exhibiting distinct anthocyanin phenotypes were studied. A comprehensive analysis of the skin and flesh was conducted to identify the presence of anthocyanins. Three identical anthocyanins were identified in both the skin and the flesh: Alatanin C, Cya-3-O(2-O-glucosyl) glu, and Cya-3-O(6-O-sinapoyl) sop-5-O-glu. To investigate the anthocyanin biosynthesis pathways in purple D. alata skin and flesh, transcriptome sequencing was performed on both tissues. This analysis identified eight anthocyanins in the skin and fifteen in the flesh. Cyanidin-type anthocyanins were found to be the most abundant type of anthocyanin in both skin and flesh. Subsequent identification of 30 key genes associated with anthocyanin biosynthesis revealed 4CL (4-coumarate CoA ligase) and DFR (dihydroflavonol 4-reductase) as potential key regulators of anthocyanin variation between skin and flesh. This study is of considerable theoretical and practical significance for the genetic enhancement of anthocyanin traits in D. alata.

Chinese yam (Dioscorea polystachya) is extensively cultivated for nutritional and medicinal applications. However, the lack of a high-quality reference genome has hindered molecular genetic analysis and breeding advancements. Here, we present a haplotype-resolved chromosome-level assembly for this autotetraploid species, featuring a 1.56-Gb genome anchored to 80 chromosomes across four haplotypes and comprising 95 668 protein-coding genes. Following divergence from Dioscorea alata about 4.64 million years ago (Mya), D. polystachya underwent a specific whole-genome duplication ~1.42 Mya, resulting in an autotetraploid species without subgenomic dominance. Notably, the biosynthetic pathway genes of dioscin, an important steroidal saponin primarily accumulating in tubers, were generally over-retained in D. polystachya compared to the diploid species D. alata. Of these genes, 7-dehydrocholesterol reductase (Dp7-DR) promoted the accumulation of dioscin, exhibiting tuber-specific expression and strong inducibility by abscisic acid, based on transcriptome and gene function analyses. We determined that the transcription factor DpbZIP12 activates Dp7-DR transcription, as supported by yeast one-hybrid, dual-luciferase reporter, and electrophoretic mobility shift assays. Notably, overexpressing Dp7-DR or DpbZIP12 resulted in lower cholesterol levels and elevated dioscin levels, while silencing either gene produced opposite metabolic profiles. These findings delineate promising targets for manipulating dioscin content and expand genetic resources for enhancing yam nutritional quality.

Taro is a tuber crop that is used for nutritional and medicinal purposes due to its abundance of non-starch polysaccharides (NSPs). Red Sprout taro is a local variety in Southern China, but the characteristics and bioactivities of its NSPs are currently unknown. In this study, NSPs were isolated from the corms of Red Sprout taro using hot-water extraction, ion-exchange chromatography, and ethanol precipitation; their molecular weight, monosaccharide composition, structural formulae, and immunomodulatory effects were examined. A novel NSP named Colocasia esculenta polysaccharide 1 (CEP1) was purified and characterized and was shown to mainly consist of glucose (60.49%) and galactose (25.92%) and have a molecular weight of 4556.272 kDa. The backbone of CEP1 consisted primarily of →4)-α-D-Glcp-(1→, →4,6)-β-D-Galp-(1→, and →3)-β-D-Galp-(1→ residues, with a branch consisting of the β-D-Glcp-(1→ residue. In addition, 25–400 µg/mL CEP1 was shown to have immunomodulatory effects on RAW264.7 macrophages. CEP1 not only increased cell viability, phagocytic capacity, inducible nitric oxide synthase secretion, and nitric oxide generation in RAW264.7 cells, but it also activated M1 and M2 macrophages to generate tumor necrosis factor α, interleukin 6, transforming growth factor β, and interleukin 10. These findings could lead to the use of CEP1 from Red Sprout taro as a possible immunomodulatory polysaccharide in functional foods.

Multi-cormels taro is one of the main cultivation types of taro in southern China, and its yield and quality are largely determined by cormel expansion. Identifying the regulatory mechanisms related to multi-cormels taro cormel expansion would be useful for improving its yield and quality. In this study, Ganyu4, a mutant of multi-cormels taro with long rod-like cormels from the somatic variation during the tissue culture, and its wild type (Ganyu2, the lateral cormels are globular) were used as material, and the morphological and physiological characteristics of cormels in different developmental stages were investigated and determined after differentially expressed genes related to cormel expansion were screened using transcriptome sequencing analysis. The results showed that the external features of taro lateral cormel expansion were reflected in the continuous and uniform growth of transverse and longitudinal diameters in Ganyu2, and the internal features were reflected in the transverse growth of parenchyma cells, rapid growth of vascular bundles, and accumulation of starch granules. The positive correlations were detected between longitudinal diameter and GA₃ content, as well as between transverse growth and starch accumulation. Transcriptome profiling revealed key candidate DEGs involved in GA₃ synthesis and signal transduction, starch and sucrose metabolism, the cell cycle, and cell wall metabolism during taro cormel expansion. CeAGPase was verified to be a positive regulator of starch accumulation and may promote taro cormel expansion. These results provide novel insights into the molecular mechanisms underlying taro cormel expansion.