Soil salinity is a major abiotic stress in Australian lentil-producing areas. It is therefore imperative to identify genetic variation for salt tolerance in order to develop lentil varieties suitable for saline soils. Conventional screening methods include the manual assessment of stress symptoms, which can be very laborious, time-consuming, and error-prone. Recent advances in image-based high-throughput phenotyping (HTP) technologies have provided unparalleled opportunities to screen plants for a range of stresses, such as salt toxicity. The current study describes the development and application of an HTP method for salt toxicity screening in lentils. In a pilot study, six lentil genotypes were evaluated to determine the optimal salt level and the growth stage for distinguishing lentil genotypes using red–green–blue (RGB) images on a LemnaTec Scanalyzer 3D phenomics platform. The optimized protocol was then applied to screen 276 accessions that were also assessed earlier in a conventional phenotypic screen. Detailed phenotypic trait assessments, including plant growth and green/non-green color pixels, were made and correlated to the conventional screen (r = 0.55; p < 0.0001). These findings demonstrated the improved efficacy of an image-based phenotyping approach that is high-throughput, efficient, and better suited to modern breeding programs.

Pulses are a key component of crop production systems in Southern Australia due to their rotational benefits and potential profit margins. However, cultivation in temperate cropping systems such as that of Southern Australia is limited by low soil water availability and subsoil constraints. This limitation of soil water is compounded by the irregular rainfall, resulting in the absence of plant available water at depth. An increase in the productivity of key pulses and expansion into environments and soil types traditionally considered marginal for their growth will require improved use of the limited soil water and adaptation to sub soil constrains. Roots serve as the interface between soil constraints and the whole plant. Changes in root system architecture (RSA) can be utilised as an adaptive strategy in achieving yield potential under limited rainfall, heterogenous distribution of resources and other soil-based constraints. The existing literature has identified a “‘Steep, Deep and Cheap” root ideotype as a preferred RSA. However, this idiotype is not efficient in a temperate system where plant available water is limited at depth. In addition, this root ideotype and other root architectural studies have focused on cereal crops, which have different structures and growth patterns to pulses due to their monocotyledonous nature and determinant growth habit. The paucity of pulse-specific root architectural studies warrants further investigations into pulse RSA, which should be combined with an examination of the existing variability of known genetic traits so as to develop strategies to alleviate production constraints through either tolerance or avoidance mechanisms. This review proposes a new model of root system architecture of “Wide, Shallow and Fine” roots based on pulse roots in temperate cropping systems. The proposed ideotype has, in addition to other root traits, a root density concentrated in the upper soil layers to capture in-season rainfall before it is lost due to evaporation. The review highlights the potential to achieve this in key pulse crops including chickpea, lentil, faba bean, field pea and lupin. Where possible, comparisons to determinate crops such as cereals have also been made. The review identifies the key root traits that have shown a degree of adaptation via tolerance or avoidance to water stress and documents the current known variability that exists in and amongst pulse crops setting priorities for future research.

Background: Pulses are cultivated across a range of soil and climatic conditions that often have many abiotic constraints to production. Whilst water stress has been identified as the greatest constraint in Australian pulse cultivation, other limitations include heat, frost, nutrient deficiency, and a variety of soil physiochemical constraints. Several studies on various pulses have examined shoot and root architecture and their ability to mitigate specific abiotic constraints. However, these studies have been conducted independently of each other, and there is a lack of amalgamated information combining both shoot and root responses that can address production constraints. Scope: This review examines the shoot and root system architecture of key pulses used for human consumption grown in Australia including chickpea, lentil, faba bean, field pea and lupin; and where possible it provides a comparison with relevant research from other crops, especially cereals. It examines research conducted on adaptations to drought, waterlogging, temperature extremes, soil chemical toxicities and high soil strength. Conclusion: The review utilises a physiological framework to identify trait combinations that define theoretical ideotypes of pulse crops that would be better able to mitigate abiotic constraints currently limiting Australian pulse productivity. This framework can be extended directly to other similar environments globally or be used to develop new ideotypes that are better adapted to a wider range of regions within Australia.

Soil salinity results in reduced productivity in field peas, making soil salinity tolerance a critical breeding objective. In this study, four pot experiments were carried out in semi-controlled environments over four consecutive years to assess the contribution of seedling vigour to salinity tolerance at the seedling stage. Split-plot designs were used to assess the effect of salt stress (sodium chloride solution at 16 dSm⁻¹) and control conditions. Extensive sets of advanced breeding lines were used in 2018–2020 to assess growth differences in relation to the treatment, with elemental analysis used on a subset of 15 lines in 2021. A salt tolerance index (STI) was defined as a proportion of shoot biomass under salt stress (DWstress) relative to the shoot dry weight under control (DWctrl). Visual scores of salt stress were recorded on a 1–10 scale (1 = tolerant, 10 = susceptible) from salt stress treatments. The consistent positive and significant correlations (p < 0.01) between shoot DWctrl and DWstress indicated that vigorous genotypes maintained higher shoot DWstress. Both the shoot DWctrl and shoot DWstress had negative and significant (p < 0.01) correlations with visual scores of salt stress. Shoot DWstress showed strong positive correlations with STI (p < 0.01). Both the shoot DWctrl and Shoot DWstress had negative correlations (p < 0.01) with shoot Na⁺ whereas shoot DWstress had a positive correlation (p < 0.05) with root Na⁺ concentration. The results indicated that seedling vigour (measured as shoot DWctrl) contributed to salinity tolerance by maintaining improved shoot DWstress, limiting Na⁺ deposition in shoot and enduring less tissue damage in field pea seedlings. Additional field evaluations are required to establish the correlations of tolerance at seedling stage with yield under saline conditions. The insights obtained from this study may assist field pea breeders in identifying salt-tolerant parent plants, offspring, and breeding lines during the initial growth phases.

Pseudomonas syringae causes bacterial blight (BB) disease worldwide on economically important fruit and vegetable crops including field pea (Pisum sativum L.). The two pathovars responsible for BB in field pea are Pseudomonas syringae pathovar pisi (Psp) and syringae (Pss). In the field, both pathovars cause indistinguishable symptoms on field pea and require laboratory diagnosis to determine the causal pathovar. To aid in-field and laboratory diagnosis, accurate, and robust loop-mediated isothermal amplification (LAMP) assays for Psp and Pss were developed. The assays were able to detect Psp or Pss on live or heat-killed bacterial cells, plant exudates, seeds, and DNA extracts with no inhibitory effects. The two specific LAMP assays developed detected Psp and Pss accurately in less than 20 min and no cross-reaction was observed with 18 strains of closely related species of Pseudomonas syringae. Compared to the conventional PCR assays, the two LAMP assays were equally specific but have advantages of producing quicker and visual live results, enabling early detection and differentiation of Psp and Pss. Our results suggested a potential use of LAMP assays for laboratory testing and can be applied for in-field surveys.