Stefanie COSTA PINTO Lopes

Dr. Stefanie COSTA PINTO Lopes

orcid

Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
15 August 2010 in The Journal of Infectious Diseases
Verified
Journal Article
Open access
PDF file
BCBruna O. Carvalho
Bruna O. Carvalho
SLStefanie COSTA PINTO Lopes
Stefanie COSTA PINTO Lopes
PNPaulo A. Nogueira
Paulo A. Nogueira
POPatricia P. Orlandi
Patricia P. Orlandi
DBDaniel Y. Bargieri
Daniel Y. Bargieri
Fabio CostaFabio Costa
Fabio Costa
Background.Plasmodium falciparum and Plasmodium vivax are responsible for most of the global burden of malaria. Although the accentuated pathogenicit

1 June 2013 in Immunology Letters
Verified
Journal Article
Closed access
RTRodolfo Thome
Rodolfo Thome
SLStefanie COSTA PINTO Lopes
Stefanie COSTA PINTO Lopes
Fabio CostaFabio Costa
Fabio Costa
LVLiana Verinaud
Liana Verinaud

1 May 2009 in Antimicrobial Agents and Chemotherapy
Verified
Journal Article
Open access
SLStefanie COSTA PINTO Lopes
Stefanie COSTA PINTO Lopes
YBYara C. Blanco
Yara C. Blanco
GJGiselle Z. Justo
Giselle Z. Justo
PNPaulo A. Nogueira
Paulo A. Nogueira
FRFrancisco L. S. Rodrigues
Francisco L. S. Rodrigues
Fabio CostaFabio Costa
Fabio Costa
Violacein is a violet pigment extracted from the gram-negative bacterium Chromobacterium violaceum . It presents bactericidal, tumoricidal, trypanocidal, and antileishmanial activities. We show that micromolar concentrations efficiently killed chloroquine-sensitive and -resistant Plasmodium falciparum strains in vitro; inhibited parasitemia in vivo, even after parasite establishment; and protected Plasmodium chabaudi chabaudi -infected mice from a lethal challenge.

11 July 2020 in BMC Bioinformatics
Verified
Journal Article
Open access
PDF file
JHJane Hung
Jane Hung
AGAllen Goodman
Allen Goodman
DRDeepali Ravel
Deepali Ravel
SLStefanie COSTA PINTO Lopes
Stefanie COSTA PINTO Lopes
GRGabriel W. Rangel
Gabriel W. Rangel
ACAnne E. Carpenter
Anne E. Carpenter
Background: A common yet still manual task in basic biology research, high-throughput drug screening and digital pathology is identifying the number, location, and type of individual cells in images. Object detection methods can be useful for identifying individual cells as well as their phenotype in one step. State-of-the-art deep learning for object detection is poised to improve the accuracy and efficiency of biological image analysis.Results: We createdKeras R-CNNto bring leading computational research to the everyday practice of bioimage analysts.Keras R-CNNimplements deep learning object detection techniques using Keras and Tensorflow (https://github.com/broadinstitute/keras-rcnn). We demonstrate the command line tool’s simplified Application Programming Interface on two important biological problems, nucleus detection and malaria stage classification, and show its potential for identifying and classifying a large number of cells. For malaria stage classification, we compare results with expert human annotators and find comparable performance.Conclusions: Keras R-CNNis a Python package that performs automated cell identification for both brightfield and fluorescence images and can process large image sets. Both the package and image datasets are freely available on GitHub and the Broad Bioimage Benchmark Collection.

28 May 2013 in PLOS ONE
Verified
Journal Article
Open access
PDF file
HCHelena Cristina C Coelho
Helena Cristina C Coelho
SLStefanie COSTA PINTO Lopes
Stefanie COSTA PINTO Lopes
JPJoão Paulo D Pimentel
João Paulo D Pimentel
PNPaulo A Nogueira
Paulo A Nogueira
Fabio CostaFabio Costa
Fabio Costa
MLMarcus Vinícius Guimarães de Lacerda
Marcus Vinícius Guimarães de Lacerda
Background Although thrombocytopenia is a hematological disorder commonly reported in malarial patients, its mechanisms are still poorly understood, with only a few studies focusing on the role of platelets phagocytosis. Methods and Findings Thirty-five malaria vivax patients and eight healthy volunteers (HV) were enrolled in the study. Among vivax malaria patients, thrombocytopenia (<150,000 platelets/µL) was found in 62.9% (22/35). Mean platelet volume (MPV) was higher in thrombocytopenic patients as compared to non- thrombocytopenic patients (p = 0.017) and a negative correlation was found between platelet count and MPV (r = −0.483; p = 0.003). Platelets from HV or patients were labeled with 5-chloromethyl fluorescein diacetate (CMFDA), incubated with human monocytic cell line (THP-1) and platelet phagocytosis index was analyzed by flow cytometry. The phagocytosis index was higher in thrombocytopenic patients compared to non-thrombocytopenic patients (p = 0.042) and HV (p = 0.048). A negative correlation was observed between platelet count and phagocytosis index (r = −0.402; p = 0.016). Platelet activation was assessed measuring the expression of P-selectin (CD62-P) in platelets’ surface by flow cytometry. No significant difference was found in the expression of P-selectin between thrombocytopenic patients and HV (p = 0.092). After evaluating the cytokine profile (IL-2, IL-4, IL-6, IL-10, TNF-α, IFN-γ and IL-17) in the patients’ sera, levels of IL-6, IL-10 and IFN-γ were elevated in malaria patients compared to HV. Moreover, IL-6 and IL-10 values were higher in thrombocytopenic patients than non-thrombocytopenic ones (p = 0.044 and p = 0.017, respectively. In contrast, TNF-α levels were not different between the three groups, but a positive correlation was found between TNF-α and phagocytosis index (r = −0.305; p = 0.037). Conclusion/Significance Collectively, our findings indicate that platelet phagocytosis may contribute to thrombocytopenia found in vivax malaria. Finally, we believe that this study opens new avenues to explore the mechanisms involved in platelet dysfunction, commonly found in vivax malaria patients.

9 January 2014 in The Journal of Infectious Diseases
Verified
Journal Article
Open access
PDF file
SLStefanie COSTA PINTO Lopes
Stefanie COSTA PINTO Lopes
LALetusa Albrecht
Letusa Albrecht
BCBruna O. Carvalho
Bruna O. Carvalho
ASAndré M. Siqueira
André M. Siqueira
RTRichard Thomson-Luque
Richard Thomson-Luque
Fabio CostaFabio Costa
Fabio Costa
There is now a growing body of evidence that challenges the current view that Plasmodium vivax-infected erythrocyte (Pv-iE) are unable to sequester. Here we used ex vivo adhesion assays with Pv-iE before and after maturation to demonstrate a higher binding potential of schizonts compared to other asexual stages. These experimental results are correlated with our observations in a panel of 50 vivax malaria patients where schizonts were completely absent in 27 isolates, and few schizonts were observed in the remaining patients. These observations prompt a paradigm shift in P. vivax biology and open avenues to investigate the role of Pv-iE sequestration.