The toxicity of herbal medicine combinations is critical to the clinical safety of traditional Chinese medicine(TCM). Current assessment methods are often inefficient and costly, creating an urgent need for new strategies to evaluate herbal medicine toxicity. We conducted research based on the commonly used TCM, Psoraleae Fructus(PF), and its formulations, Er Shen Pills(ESP) and Si Shen Pills(SSP). Therefore, We will conduct a series of analyses on Drosophila and Vibrio fischeri. In Drosophila experiments, ESP and SSP groups showed longer survival times, with male flies being more sensitive, making them more suitable for toxicity studies. Enzyme assays indicated a decreasing toxicity trend for ESP and SSP compared to PF, with significant changes observed in female flies. The qPCR analysis revealed that the upregulation of cpr and cyp6a8, along with the downregulation of keap1, hsp22, hsp68, gstD6, and hsp83, can assess the toxicity changes of PF, ESP, and SSP. The primary detoxification pathway involves the metabolism of xenobiotics by cytochrome P450. In the Vibrio fischeri assay, the IC50(50% inhibition;) value of ESP was the highest, indicating reduced toxicity compared to PF. Screening for toxic components revealed that PF had 4, ESP had 16, and SSP had 22 components, primarily acting on LuxD, LuxE, and LuxG.