Hassan Saeed

Mr. Hassan Saeed

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Research Focus & Metrics

Academic Career Length

3Years (2024-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 October 2024 in Sensors
Verified
Journal Article
Open access
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HSHassan Saeed
Hassan Saeed
ASAndrzej Skalski
Andrzej Skalski
The estimation of vessels’ centerlines is a critical step in assessing the geometry of the vessel, the topological representation of the vessel tree, and vascular network visualization. In this research, we present a novel method for obtaining geometric parameters from peripheral arteries in 3D medical binary volumes. Our approach focuses on centerline extraction, which yields smooth and robust results. The procedure starts with a segmented 3D binary volume, from which a distance map is generated using the Euclidean distance transform. Subsequently, a skeleton is extracted, and seed points and endpoints are identified. A search methodology is used to derive the best path on the skeletonized 3D binary array while tracking from the goal points to the seed point. We use the distance transform to calculate the distance between voxels and the nearest vessel surface, while also addressing bifurcations when vessels divide into multiple branches. The proposed method was evaluated on 22 real cases and 10 synthetically generated vessels. We compared our method to different state-of-the-art approaches and demonstrated its better performance. The proposed method achieved an average error of 1.382 mm with real patient data and 0.571 mm with synthetic data, both of which are lower than the errors obtained by other state-of-the-art methodologies. This extraction of the centerline facilitates the estimation of multiple geometric parameters of vessels, including radius, curvature, and length.

29 August 2025 in Computer Methods and Programs in Biomedicine
Verified
Journal Article
Open access
MAMohammed A. AboArab
Mohammed A. AboArab
MAMiloš Anić
Miloš Anić
VPVassiliki T. Potsika
Vassiliki T. Potsika
HSHassan Saeed
Hassan Saeed
MZManahil Zulfiqar
Manahil Zulfiqar
Dimitrios FotiadisDimitrios Fotiadis
Dimitrios Fotiadis
Peripheral artery disease (PAD) is a progressive vascular condition affecting >237 million individuals worldwide. Accurate diagnosis and patient-specific treatment planning are critical but are often hindered by limited access to advanced imaging tools and real-time analytical support. This study presents DECODE, an open-source, cloud-based platform that integrates artificial intelligence, interactive 3D visualization, and computational modeling to improve the noninvasive management of PAD. The DECODE platform was designed as a modular backend (Django) and frontend (React) architecture that combines deep learning-based segmentation, real-time volume rendering, and finite element simulations. Peripheral artery and intima-media thickness segmentation were implemented via convolutional neural networks, including extended U-Net and nnU-Net architectures. Centreline extraction algorithms provide quantitative vascular geometry analysis. Balloon angioplasty simulations were conducted via nonlinear finite element models calibrated with experimental data. Usability was evaluated via the System Usability Scale (SUS), and user acceptance was assessed via the Technology Acceptance Model (TAM). Peripheral artery segmentation achieved an average Dice coefficient of 0.91 and a 95th percentile Hausdorff distance 1.0 mm across 22 computed tomography dataset. Intima-media segmentation evaluated on 300 intravascular optical coherence tomography images demonstrated Dice scores 0.992 for the lumen boundaries and 0.980 for the intima boundaries, with corresponding Hausdorff distances of 0.056 mm and 0.101 mm, respectively. Finite element simulations successfully reproduced the mechanical interactions between balloon and artery models in both idealized and subject-specific geometries, identifying pressure and stress distributions relevant to treatment outcomes. The platform received an average SUS score 87.5, indicating excellent usability, and an overall TAM score 4.21 out of 5, reflecting high user acceptance. DECODE provides an automated, cloud-integrated solution for PAD diagnosis and intervention planning, combining deep learning, computational modeling, and high-fidelity visualization. The platform enables precise vascular analysis, real-time procedural simulation, and interactive clinical decision support. By streamlining image processing, enhancing segmentation accuracy, and enabling in-silico trials, DECODE offers a scalable infrastructure for personalized vascular care and sets a new benchmark in digital health technologies for PAD.