Berk Aykut

Dr. Berk Aykut

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 August 2020 in Science Immunology
Verified
Journal Article
Closed access
BABerk Aykut
Berk Aykut
RCRuonan Chen
Ruonan Chen
JKJacqueline I. Kim
Jacqueline I. Kim
DWDongling Wu
Dongling Wu
SSSorin A. A. Shadaloey
Sorin A. A. Shadaloey
GMGeorge Miller
George Miller
Blockade of the Piezo1 mechanoreceptor decreases myeloid cell suppression of immune responses to cancer and polymicrobial sepsis.

15 April 2022 in Journal of Clinical Investigation
Verified
Journal Article
Open access
PDF file
JLJoshua C. Leinwand
Joshua C. Leinwand
BPBidisha Paul
Bidisha Paul
RCRuonan Chen
Ruonan Chen
FXFangxi Xu
Fangxi Xu
MSMaria A Sierra
Maria A Sierra
GMGeorge Miller
George Miller
The gut microbiome shapes local and systemic immunity. The liver is presumed to be a protected sterile site. As such, a hepatic microbiome has not been examined. Here, we showed a liver microbiome in mice and humans that is distinct from that of the gut and is enriched in Proteobacteria. It undergoes dynamic alterations with age and is influenced by the environment and host physiology. Fecal microbial transfer experiments revealed that the liver microbiome is populated from the gut in a highly selective manner. Hepatic immunity is dependent on the microbiome, specifically the bacteroidetes species. Targeting bacteroidetes with oral antibiotics reduced hepatic immune cells by approximately 90%, prevented antigen-presenting cell (APC) maturation, and mitigated adaptive immunity. Mechanistically, our findings are consistent with presentation of bacteroidetes-derived glycosphingolipids to NKT cells promoting CCL5 signaling, which drives hepatic leukocyte expansion and activation, among other possible host-microbe interactions. Collectively, we reveal a microbial/glycosphingolipid/NKT/CCL5 axis that underlies hepatic immunity.

10 August 2022 in Oncogene
Verified
Journal Article
Closed access
PDF file
BDBrian Diskin
Brian Diskin
SASalma Adam
Salma Adam
GSGustavo Sanchez Soto
Gustavo Sanchez Soto
MLMiguel Liria
Miguel Liria
BABerk Aykut
Berk Aykut
GMGeorge Miller
George Miller

1 November 2024 in The Journal of Heart and Lung Transplantation
Verified
Journal Article
Closed access
CMCathlyn K. Medina
Cathlyn K. Medina
BABerk Aykut
Berk Aykut
LPLauren E. Parker
Lauren E. Parker
NPNeel K. Prabhu
Neel K. Prabhu
LKLillian Kang
Lillian Kang
JTJoseph W. Turek
Joseph W. Turek

20 May 2025 in Circulation
Verified
Journal Article
Closed access
NPNeel K. Prabhu
Neel K. Prabhu
BABerk Aykut
Berk Aykut
MMMichael Mensah-Mamfo
Michael Mensah-Mamfo
DODouglas M. Overbey
Douglas M. Overbey
JTJoseph W. Turek
Joseph W. Turek
Heart valve replacement in children is fraught with long-term morbidity and mortality rates, largely because conventional implants lack the capacity to grow with the child. Partial heart transplantation presents a potential solution by transplanting only specific segments of a donor heart, thereby providing a living and growing heart valve implant. This approach harnesses the full spectrum of cardiac tissues, which, when freshly procured and supported by immunosuppression, can integrate as functional and potentially growth-capable tissue. This state-of-the-art review discusses the history and development of partial heart transplantation, its indications, recent clinical experiences, regulation, and future directions.

9 December 2024 in Biomedicines
Verified
Journal Article
Open access
PDF file
CMCathlyn K Medina
Cathlyn K Medina
BABerk Aykut
Berk Aykut
The gut microbiome has been shown to play a significant role in solid organ transplantation, potentially influencing graft function and patient outcomes. Dysbiosis, characterized by reduced microbial diversity and an increase in pathogenic taxa, has been linked to higher incidences of allograft rejection, graft dysfunction, and post-transplant mortality. Several studies suggest that the gut microbiome might be able to serve as both a biomarker and a therapeutic target, potentially guiding personalized immunosuppressive therapies and other interventions to improve outcomes after solid organ transplantation. As summarized in this review, clinical studies have shown that specific microbial shifts correlate with adverse outcomes, including acute rejection and chronic allograft dysfunction. As research surrounding the relationship between the gut microbiome and solid organ transplant progresses, the integration of microbial analysis into clinical practice has the potential to revolutionize post-transplant care, offering new avenues to improve graft survival and patient quality of life. This review aims to provide a comprehensive overview of the relationship between gut microbial dysbiosis and transplantation outcomes, emphasizing the impact on kidney, liver, lung, and heart transplant recipients.