The potential benefits of the low phytic acid (lpa) seed trait for human and animal nutrition, and for phosphorus management in non-ruminant animal production, are well documented. However, in many cases the lpa trait is associated with impaired seed or plant performance, resulting in reduced yield. This has given rise to the perception that the lpa trait is tightly correlated with reduced yield in diverse crop species. Here we report a powerful test of this correlation. We measured grain yield in lines homozygous for each of six barley (Hordeum vulgare L.) lpa mutations that greatly differ in their seed phytic acid levels. Performance comparisons were between sibling wild-type and mutant lines obtained following backcrossing, and across two years in five Idaho (USA) locations that greatly differ in crop yield potential. We found that one lpa mutation (Hvlpa1-1) had no detectable effect on yield and a second (Hvlpa4-1) resulted in yield losses of only 3.5%, across all locations. When comparing yields in three relatively non-stressful production environments, at least three lpa mutations (Hvlpa1-1, Hvlpa3-1, and Hvlpa4-1) typically had yields similar to or within 5% of the wild-type sibling isoline. Therefore in the case of barley, lpa mutations can be readily identified that when simply incorporated into a cultivar result in adequately performing lines, even with no additional breeding for performance within the lpa line. In conclusion, while some barley lpa mutations do impact field performance, a substantial fraction appears to have little or no effect on yield.

Nitrogen (N) is the most limiting nutrient in cereal production, yet its use efficiency remains very low at only 35%. Nutrient use efficiency (NUE) is crucial for increasing crop yield and quality while reducing fertilizer inputs and minimizing environmental damage. Optimum N rates that maximize yield without reducing NUE have been found to vary from location to location. This field study assessed the effect of N rates on the yield and quality of spring wheat (Triticum aestivum L.) at five locations in southern Idaho in 2015–2017. Nitrogen was applied as urea (46–0–0) immediately after planting at five rates: 0, 84, 168, 252, and 336 kg ha^–1. Nitrogen application improved grain quality (increased protein) even when no increase in yield was noted. Nitrogen use efficiency and N uptake were affected by N rate at only 2 and 4 of 14 site‐years, respectively. These observations highlight the challenging task of pinpointing the appropriate N rates for optimizing wheat yield, grain protein, N uptake and NUE; and the importance of adjusting N rates based on location, year, and prevalent environmental conditions.

Accurate sensor-based prediction of crop yield and grain quality in-season would enable growers to adjust nitrogen (N) fertilizer management for optimized production. This study assessed the feasibility (and compared the accuracy) of wheat (Triticum aestivum L.) yield, grain N uptake, and protein content prediction with in-season crop spectral reflectance measurements (Normalized Difference Vegetative Index, NDVI) obtained with a handheld GreenSeeker (GS) sensor and an Unmanned Aerial Vehicle (UAV)-mounted sensor. A strong positive correlation was observed between GS NDVI and UAV NDVI at Feekes 5 (R² = 0.78) and Feekes 10 (R² = 0.70). At Feekes 5, GS NDVI and UAV NDVI explained 42% and 43% of wheat yield, respectively. The correlation was weaker at Feekes 10 (R² of 0.34 and 0.25 for GS NDVI and UAV NDVI, respectively). The accuracy of wheat grain N uptake prediction was comparable to that of yield: the R² values for GS NDVI and UAV NDVI were 0.53 and 0.37 at Feekes 5 and 0.13 and 0.20 at Feekes 10. We found that neither GS NDVI nor UAV NDVI in-season data were useful in prediction of wheat grain protein content. In conclusion, wheat yield and grain N uptake can be estimated at Feekes 5 using either handheld or aerial based NDVI with comparable accuracy.

Barley yellow dwarf virus (BYDV) is an important vector-borne pathogen of cereals. Although many species of grasses are known to host BYDV, knowledge of their role in virus spread in regional agroecosystems remains limited. Between 2012 and 2016, Idaho winter wheat production was affected by BYDV. BYDV-PAV and the bird cherry-oat aphid (BCOA) (Rhopalosiphum padi L.) vector were commonly present in the affected areas. A series of greenhouse bioassays were performed to examine whether two types of corn (Zea mays L.), dent and sweet, and three commonly found grassy weeds, downy brome (Bromus tectorum L.), green foxtail (Setaria viridis L.), and foxtail barley (Hordeum jubatum L.), can be inoculated with BYDV (species BYDV-PAV) by BCOA and also act as sources of the virus in winter wheat. BCOA successfully transmitted BYDV-PAV to both corn types and all weed species. Virus titers differed between the weed species (P = 0.032) and between corn types (P = 0.001). In transmission bioassays, aphids were able to survive on these host plants during the 5-day acquisition access period and later successfully transmitted BYDV-PAV to winter wheat (var. SY Ovation). Transmission success was positively correlated with the virus titer of the source plant (P < 0.001) and influenced by weed species (P = 0.028) but not corn type. Overall, the results of our inoculation and transmission assays showed that the examined weed species and corn types can be inoculated with BYDV-PAV by BCOA and subsequently act as sources of infections in winter wheat.

Benzoxazinoid (Bx) metabolites produced by wheat and other members of the Poaceae have activity against Fusarium sp. that cause cereal diseases including Fusarium head blight (FHB) on wheat and barley. Certain Bx metabolites can be detoxified by Fusarium sp. with the arylamine N-acetyltransferase NAT1. Investigation of this pathway may reveal strategies for increasing FHB resistance, such as selection for higher levels of Bx metabolites within existing germplasm and/or engineering fungal susceptibility via host induced silencing of NAT1. We assessed the reactions of fifteen wheat cultivars or breeding lines adapted to the Northwestern United States to infection with F. graminearum Δnat1 mutants that should be sensitive to Bx metabolites. Significant differences were noted in disease severity and deoxynivalenol (DON) among the cultivars 21 d after inoculation with either mutant or wildtype (PH1) strains. Mutant vs. wildtype strains did not result in significant variation for infection severity (as measured by % infected florets), but inoculation with Δnat1 mutants vs. wildtype resulted in significantly lower DON concentrations in mature kernels (p < 0.0001). Of the cultivars tested, HRS3419 was the most resistant cultivar to PH1 (severity = 62%, DON = 45 ppm) and Δnat1 mutants (severity = 61%, DON = 30 ppm). The cultivar most susceptible to infection was Kelse with PH1 (severity = 100%, DON = 292 ppm) and Δnat1 mutants (severity = 100%, DON = 158 ppm). We hypothesized that sub-lethal Bx metabolite levels may suppress DON production in F. graminearum Δnat1 mutants. In vitro assays of Bx metabolites BOA, MBOA, and DIMBOA at 30 μM did not affect growth, but did reduce DON production by Δnat1 and PH1. Although the levels of Bx metabolites are likely too low in the wheat cultivars we tested to suppress FHB, higher levels of Bx metabolites may contribute towards reductions in DON and FHB.

Tocochromanols are recognized for nutritional content, plant stress response, and seed longevity. Here we present a systems biological approach to characterize and develop predictive assays for genes affecting tocochromanol variation in barley. Major QTL, detected in three regions of a SNP linkage map, affected multiple tocochromanol forms. Candidate genes were identified through barley/rice orthology and sequenced in genotypes with disparate tocochromanol profiles. Gene-specific markers, designed based on observed polymorphism, mapped to the originating QTL, increasing R² values at the respective loci. Polymorphism within promoter regions corresponded to motifs known to influence gene expression. Quantitative PCR analysis revealed a trend of increased expression in tissues grown at cold temperatures. These results demonstrate utility of a novel method for rapid gene identification and characterization, and provide a resource for efficient development of barley lines with improved tocochromanol profiles.