Joel Gabre

Dr. Joel Gabre


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2023 in Journal of Clinical Investigation
Verified
Journal Article
Open access
PDF file
RCRicardo Cruz-Acuña
Ricardo Cruz-Acuña
SKSecunda W. Kariuki
Secunda W. Kariuki
KSKensuke Sugiura
Kensuke Sugiura
SKSpyros Karaiskos
Spyros Karaiskos
EPEleanor M. Plaster
Eleanor M. Plaster
ARAnil Rustgi
Anil Rustgi
Increased extracellular matrix (ECM) stiffness has been implicated in esophageal adenocarcinoma (EAC) progression, metastasis, and resistance to therapy. However, the underlying protumorigenic pathways are yet to be defined. Additional work is needed to develop physiologically relevant in vitro 3D culture models that better recapitulate the human tumor microenvironment and can be used to dissect the contributions of matrix stiffness to EAC pathogenesis. Here, we describe a modular, tumor ECM–mimetic hydrogel platform with tunable mechanical properties, defined presentation of cell-adhesive ligands, and protease-dependent degradation that supports robust in vitro growth and expansion of patient-derived EAC 3D organoids (EAC PDOs). Hydrogel mechanical properties control EAC PDO formation, growth, proliferation, and activation of tumor-associated pathways that elicit stem-like properties in the cancer cells, as highlighted through in vitro and in vivo environments. We also demonstrate that the engineered hydrogel serves as a platform for identifying potential therapeutic targets to disrupt the contribution of protumorigenic matrix mechanics in EAC. Together, these studies show that an engineered PDO culture platform can be used to elucidate underlying matrix-mediated mechanisms of EAC and inform the development of therapeutics that target ECM stiffness in EAC.

14 January 2025 in Journal of Clinical Investigation
Verified
Journal Article
Open access
PDF file
ASAlice E. Shin
Alice E. Shin
KSKensuke Sugiura
Kensuke Sugiura
SKSecunda W. Kariuki
Secunda W. Kariuki
DCDavid A. Cohen
David A. Cohen
SFSamuel Flashner
Samuel Flashner
ARAnil Rustgi
Anil Rustgi
Colorectal cancer (CRC) remains a leading cause of cancer death because of metastatic spread. LIN28B is overexpressed in 30% of CRCs and promotes metastasis, yet its mechanisms remain unclear. In this study, we genetically modified CRC cell lines to overexpress LIN28B, resulting in enhanced PI3K/AKT pathway activation and liver metastasis in mice. We developed genetically modified mouse models with constitutively active Pik3ca that form intestinal tumors progressing to liver metastases with an intact immune system, addressing the limitations of previous Pik3ca -mutant models, including long tumor latency, mixed histology, and lack of distant metastases. The PI3Kα-specific inhibitor alpelisib reduced migration and invasion in vitro and metastasis in vivo. We present a comprehensive analysis of vertical inhibition of the PI3K/AKT pathway in CRC using the FDA-approved drugs alpelisib and capivasertib (an AKT inhibitor) in combination with LY2584702 (a ribosomal protein S6 kinase inhibitor) in CRC cell lines and mouse- and patient-derived organoids. Tissue microarrays from patients with CRC verified that LIN28B and PI3K/AKT pathway activation correlate with CRC progression. These findings highlight the critical role of the LIN28B-mediated PI3K/AKT pathway in CRC metastasis, the therapeutic potential of targeted inhibition, and the promise of patient-derived organoids in precision medicine in metastatic CRC.

22 September 2024 in Biomolecules
Verified
Journal Article
Open access
PDF file
SSSteven Su
Steven Su
YMYosuke Mitani
Yosuke Mitani
TLTianxia Li
Tianxia Li
USUma M. Sachdeva
Uma M. Sachdeva
SFSamuel Flashner
Samuel Flashner
JGJoel Gabre
Joel Gabre
Barrett’s esophagus (BE) is a common precancerous lesion that can progress to esophageal adenocarcinoma (EAC). There are significant alterations in the esophageal microbiome in the progression from healthy esophagus to BE to EAC, including an increased abundance of a variety of lactate-producing bacteria and an increase of lactate in the tumor microenvironment, as predicted by metabolic modeling. The role of bacterial lactate in EAC is unknown. Here, we utilize patient-derived organoid (PDO) models of EAC and demonstrate that lactate inhibits the growth and proliferation of EAC PDOs through alterations in the tumor NADH/NAD+ redox state. Further RNA sequencing of EAC PDOs identifies ID1 and RSAD2 as potential regulatory molecules crucial in mediating lactate’s ability to suppress glycolysis and proliferation. Gene ontology analysis also identifies the activation of inflammatory and immunological pathways in addition to alterations in the metabolic pathways in EAC PDOs exposed to lactate, suggesting a multi-faceted role for lactate in the pathogenesis of EAC.

21 August 2024 in American Journal of Gastroenterology
Verified
Journal Article
Closed access
SPSydney F. Pomenti
Sydney F. Pomenti
SFSamuel Flashner
Samuel Flashner
APArmando Del Portillo
Armando Del Portillo
HNHiroshi Nakagawa
Hiroshi Nakagawa
JGJoel Gabre
Joel Gabre
DKDavid A. Katzka
David A. Katzka
Esophageal squamous cell carcinoma (ESCC) remains the most common malignancy of the esophagus worldwide. Environmental and lifestyle exposures such as alcohol and tobacco have been well defined in the pathogenesis of ESCC, acting in concert with cell intrinsic epigenomic, genomic and transcriptomic changes. However, a variety of nonenvironmental etiologies including Fanconi anemia, lichen planus, chronic mucocutaneous candidiasis, esophageal epidermoid metaplasia, epidermolysis bullosa, tylosis, esophageal atresia, and achalasia receive minimal attention despite a high risk of ESCC in these diseases. The goal of this review was to promote clinical recognition and suggest a diagnostic framework for earlier detection of ESCC in patients with these rare diseases. In all the discussed conditions, a change in symptoms should trigger a prompt endoscopic evaluation, and endoscopic surveillance programs with advanced imaging techniques and chromoendoscopy should be considered. Moreover, we leverage the convergence of these diseases on ESCC to identify common mechanisms underlying malignant transformation including aberrant proliferation, mucosal barrier dysfunction, increased inflammation, and genome instability. In this study, we summarize the clinical presentation, pathologic findings, potential screening strategies, and common mechanisms of malignant transformation associated with these rare diseases that drive ESCC.

24 October 2020 in Current Treatment Options in Gastroenterology
Verified
Journal Article
Closed access
PDF file
JGJoel Gabre
Joel Gabre
ACAmitabh Chak
Amitabh Chak
ARAnil Rustgi
Anil Rustgi

10 October 2024 in bioRxiv
Verified
Preprint
Open access
PDF file
TLTianxia Li
Tianxia Li
YMYosuke Mitani
Yosuke Mitani
RCRicardo Cruz-Acuña
Ricardo Cruz-Acuña
TKTatiana A. Karaksheva
Tatiana A. Karaksheva
VSVarun Sahu
Varun Sahu
JGJoel Gabre
Joel Gabre
The human esophagus, derived from the anterior foregut endoderm, requires proper dorsal-ventral patterning for development. The transcription factor SOX2, crucial in this process, when dysregulated, leads to congenital esophageal abnormalities. EPHA2, a receptor tyrosine kinase, is vital in various developmental processes and cancer models, where it activates SOX2. This study demonstrates that EPHA2 regulates SOX2 expression during esophageal development using human iPSCs and iPSC-derived human esophageal organoids (HEO). Inhibition of EPHA2 decreased iPSC-derived HEO formation and SOX2 expression. These findings provide evidence of EPHA2 as being a key regulator of SOX2 signaling in early esophageal development. SFD: Serum-Free Differentiation media; EPC: esophageal progenitor cells; HEO: human esophageal organoids Created with BioRender.com Graphical Abstract SOX2 is crucial for proper esophageal development. EPHA2 is a receptor tyrosine kinase involved in various developmental processes. EPHA2 activates SOX2. Inhibition of EPHA2 decreased SOX2 expression and human esophageal organoid formation.