Subtribe Orchidinae (Orchidaceae, Orchidoideae) are a nearly cosmopolitan taxon of terrestrial orchids, comprising about 1800 species in 47 to 60 genera. Although much progress has been made in recent years of phylogenetics of Orchidinae, considerable problems remain to be addressed. Based on molecular phylogenetics, we attempt to illustrate the phylogenetic relationships and discuss generic delimitation within Orchidinae. Seven DNA markers (five plastid and two nuclear), a broad sampling of Orchidinae (400 species in 52 genera) and three methods of phylogenetic analysis (maximum likelihood, maximum parsimony and Bayesian inference) were used. Orchidinae s.l. are monophyletic. Satyrium is sister to the rest of Orchidinae s.l. Brachycorythis and Schizochilus are successive sister to Asian-European Orchidinae s.s. Sirindhornia and Shizhenia are successive sister to clade formed by Tsaiorchis-Hemipilia-Ponerorchis alliance. Stenoglottis is sister to the Habenaria-Herminium-Peristylus alliance. Habenaria, currently the largest genus in Orchidinae, is polyphyletic and split into two distant clades: one Asian-Australian and the other African–American–Asian. Diplomeris is sister to Herminium s.l. plus Asian-Australian Habenaria. We propose to recognize five genera in the Ponerorchis alliance: Hemipilia, Ponerorchis s.l., Sirindhornia, Shizhenia and Tsaiorchis. Splitting Habenaria into two genera based on morphological characters and geographical distribution may be the least disruptive approach, and it is reasonable to keep Satyrium in Orchidinae.
1 August 2014 in Molecular Phylogenetics and Evolution
A phylogenetic hypothesis for tribe Podochileae with emphasis on subtribe Eriinae s.s. is based on nucleotide sequences of the nuclear ITS and four plastid regions (matK, trnL-F spacer, trnL intron and ycf1). The strict consensus tree based on parsimony is largely congruent with the maximum likelihood tree with a few major differences; most importantly, monophyly of Podochileae as recently circumscribed is strongly supported by the maximum likelihood tree but not recovered in the parsimony analysis. Monophyly of Thelasiinae s.s. (without Ridleyella) and Eriinae s.l. (including Podochilinae) is supported, whereas Eria s.l. appears polyphyletic. The generic circumscription of Eriinae s.s. (excluding Podochilinae) is revised, and 21 genera are accepted, including two not previously recognized. Nomenclatural changes and a key to genera in Eriinae are provided.
The Manokwari Declaration is an unprecedented pledge by the governors of Indonesia’s two New Guinea provinces to promote conservation and become SE Asia’s new Costa Rica. This is an exciting, yet challenging endeavour that will require working on many fronts that transcend single disciplines. Because Indonesian New Guinea has the largest expanse of intact forests in SE Asia, large-scale conservation pledges like the Manokwari Declaration will have a global impact on biodiversity conservation and climate change mitigation.
Coelogyne has been shown in analyses of molecular data to be polyphyletic with 14 other genera of Coelogyninae (Arethuseae) embedded. Three possible solutions to establish an alternative classification are considered: lumping all of these in the oldest genus, in this case Coelogyne, distinguishing two genera corresponding to the two main clades in the alliance or recognition of many new genera to accommodate the groups of Coelogyne that are more closely related to some of these other genera. The second and third alternatives are considered non-viable because there are no reliable morphological characters that can be used to identify these taxa. Here, we make the necessary combinations and new names to make the first option possible.
17 October 2011 in Botanical Journal of the Linnean Society