Anna Zawadzka-Kazimierczuk

Dr. Anna Zawadzka-Kazimierczuk

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 October 2010 in Journal of Biomolecular NMR
Verified
Journal Article
Open access
PDF file
VMVeronika Motáčková
Veronika Motáčková
JNJiří Nováček
Jiří Nováček
AZAnna Zawadzka-Kazimierczuk
Anna Zawadzka-Kazimierczuk
Krzysztof KazimierczukKrzysztof Kazimierczuk
Krzysztof Kazimierczuk
LŽLukáš Žídek
Lukáš Žídek
VSVladimír Sklenář
Vladimír Sklenář
A strategy for complete backbone and side-chain resonance assignment of disordered proteins with highly repetitive sequence is presented. The protocol is based on three resolution-enhanced NMR experiments: 5D HN(CA)CONH provides sequential connectivity, 5D HabCabCONH is utilized to identify amino acid types, and 5D HC(CC-TOCSY)CONH is used to assign the side-chain resonances. The improved resolution was achieved by a combination of high dimensionality and long evolution times, allowed by non-uniform sampling in the indirect dimensions. Random distribution of the data points and Sparse Multidimensional Fourier Transform processing were used. Successful application of the assignment procedure to a particularly difficult protein, δ subunit of RNA polymerase from Bacillus subtilis, is shown to prove the efficiency of the strategy. The studied protein contains a disordered C-terminal region of 81 amino acids with a highly repetitive sequence. While the conventional assignment methods completely failed due to a very small differences in chemical shifts, the presented strategy provided a complete backbone and side-chain assignment.

1 November 2010 in Progress in Nuclear Magnetic Resonance Spectroscopy
Verified
Journal Article
Closed access
Krzysztof KazimierczukKrzysztof Kazimierczuk
Krzysztof Kazimierczuk
JSJan Stanek
Jan Stanek
AZAnna Zawadzka-Kazimierczuk
Anna Zawadzka-Kazimierczuk
WKWiktor Koźmiński
Wiktor Koźmiński

21 September 2006 in Journal of Biomolecular NMR
Verified
Journal Article
Closed access
PDF file
Krzysztof KazimierczukKrzysztof Kazimierczuk
Krzysztof Kazimierczuk
AZAnna Zawadzka-Kazimierczuk
Anna Zawadzka-Kazimierczuk
WKWiktor Koźmiński
Wiktor Koźmiński
IZIgor Zhukov
Igor Zhukov

1 May 2008 in Journal of Magnetic Resonance
Verified
Journal Article
Closed access
Krzysztof KazimierczukKrzysztof Kazimierczuk
Krzysztof Kazimierczuk
AZAnna Zawadzka-Kazimierczuk
Anna Zawadzka-Kazimierczuk
WKWiktor Koźmiński
Wiktor Koźmiński

1 August 2010 in Journal of Magnetic Resonance
Verified
Journal Article
Closed access
Krzysztof KazimierczukKrzysztof Kazimierczuk
Krzysztof Kazimierczuk
AZAnna Zawadzka-Kazimierczuk
Anna Zawadzka-Kazimierczuk
WKWiktor Koźmiński
Wiktor Koźmiński

20 March 2011 in Journal of Biomolecular NMR
Verified
Journal Article
Closed access
PDF file
JNJiří Nováček
Jiří Nováček
AZAnna Zawadzka-Kazimierczuk
Anna Zawadzka-Kazimierczuk
VPVeronika Papoušková
Veronika Papoušková
LŽLukáš Žídek
Lukáš Žídek
HŠHana Šanderová
Hana Šanderová
VSVladimír Sklenář
Vladimír Sklenář