Species information is a key component of any forest inventory. However, when performing forest inventory from aerial scanning Lidar data, species classification can be very difficult. We investigated changes in classification accuracy while identifying five individual tree species (Douglas-fir, western redcedar, bigleaf maple, red alder, and black cottonwood) in the Pacific Northwest United States using two data sets: discrete point Lidar data alone and discrete point data in combination with waveform Lidar data. Waveform information included variables which summarize the frequency domain representation of all waveforms crossing individual trees. Discrete point data alone provided 79.2 percent overall accuracy (kappa = 0.74) for all 5 species and up to 97.8 percent (kappa = 0.96) when comparing individual pairs of these 5 species. Incorporating waveform information improved the overall accuracy to 85.4 percent (kappa = 0.817) for five species, and in several two-species comparisons. Improvements were most notable in comparing the two conifer species and in comparing two of the three hardwood species.

Corals are a major habitat-building life-form on tropical reefs that support a quarter of all species in the ocean and provide ecosystem services to millions of people. Marine heat waves continue to threaten and shape reef ecosystems by killing individual coral colonies and reducing their diversity. However, marine heat waves are spatially and temporally heterogeneous, and so too are the environmental and biological factors mediating coral resilience during and following thermal events. This combination results in highly variable outcomes at both the coral bleaching and mortality stages of every event. This, in turn, impedes the assessment of changing reef-scale patterns of thermal tolerance or places of resistance known as reef refugia. We developed a large-scale, high-resolution coral mortality monitoring capability based on airborne imaging spectroscopy and applied it to a major marine heat wave in the Hawaiian Islands. While water depth and thermal stress strongly mediated coral mortality, relative coral loss was also inversely correlated with preheat-wave coral cover, suggesting the existence of coral refugia. Subsequent mapping analyses indicated that potential reef refugia underwent up to 40% lower coral mortality compared with neighboring reefs, despite similar thermal stress. A combination of human and environmental factors, particularly coastal development and sedimentation levels, differentiated resilient reefs from other more vulnerable reefs. Our findings highlight the role that coral mortality mapping, rather than bleaching monitoring, can play for targeted conservation that protects more surviving corals in our changing climate.

Coral is the life-form that underpins the habitat of most tropical reef ecosystems, thereby supporting biological diversity throughout the marine realm. Coral reefs are undergoing rapid change from ocean warming and nearshore human activities, compromising a myriad of services provided to societies including coastal protection, fishing, and cultural practices. In the face of these challenges, large-scale operational mapping of live coral cover within and across reef ecosystems could provide more opportunities to address reef protection, resilience, and restoration at broad management- and policy-relevant scales. We developed an airborne mapping approach combining laser-guided imaging spectroscopy and deep learning models to quantify, at a large archipelago scale, the geographic distribution of live corals to 16-m water depth throughout the main Hawaiian islands. Airborne estimates of live coral cover were highly correlated with field-based estimates of live coral cover (R² = 0.94). Our maps were used to assess the relative condition of reefs based on live coral, and to identify potential coral refugia in the face of human-driven stressors, including marine heat waves. Geospatial modeling revealed that water depth, wave power, and nearshore development accounted for the majority (>60%) of live coral cover variation, but other human-driven factors were also important. Mapped interisland and intraisland variation in live coral location improves our understanding of reef geography and its human impacts, thereby guiding environmental management for reef resiliency. Significance Coral reefs are changing at unprecedented rates, and the majority of reefs are undergoing widespread losses in live coral cover. Management and policy development efforts focused on conserving and restoring coral reefs are hampered by a lack of geographically consistent and actionable high-resolution information on the specific location and extent of live coral. Based on an operational airborne technique, we developed and applied a live coral mapping capability across the main Hawaiian islands to identify potential coral refugia as well as reefs for potential coral restoration. Our findings inform current management actions across the archipelago and demonstrate the tactical role that live coral mapping can play to support decision-making at large ecological scales.

Pathogenic invasions are a major source of change in both agricultural and natural ecosystems. In forests, fungal pathogens can kill habitat-generating plant species such as canopy trees, but methods for remote detection, mapping and monitoring of such outbreaks are poorly developed. Two novel species of the fungal genus Ceratocystis have spread rapidly across humid and mesic forests of Hawaiʻi Island, causing widespread mortality of the keystone endemic canopy tree species, Metrosideros polymorpha (common name: ʻōhiʻa). The process, known as Rapid Ohia Death (ROD), causes browning of canopy leaves in weeks to months following infection by the pathogen. An operational mapping approach is needed to track the spread of the disease. We combined field studies of leaf spectroscopy with laboratory chemical studies and airborne remote sensing to develop a spectral signature for ROD. We found that close to 80% of ROD-infected plants undergo marked decreases in foliar concentrations of chlorophyll, water and non-structural carbohydrates, which collectively result in strong consistent changes in leaf spectral reflectance in the visible (400–700 nm) and shortwave-infrared (1300–2500 nm) wavelength regions. Leaf-level results were replicated at the canopy level using airborne laser-guided imaging spectroscopy, with quantitative spectral separability of normal green-leaf canopies from suspected ROD-infected brown-leaf canopies in the visible and shortwave-infrared spectrum. Our results provide the spectral–chemical basis for detection, mapping and monitoring of the spread of ROD in native Hawaiian forests.

Coral reef ecosystems are rapidly changing, and a persistent problem with monitoring changes in reef habitat complexity rests in the spatial resolution and repeatability of measurement techniques. We developed a new approach for high spatial resolution (<1 m) mapping of nearshore bathymetry and three-dimensional habitat complexity (rugosity) using airborne high-fidelity imaging spectroscopy. Using this new method, we mapped coral reef habitat throughout two bays to a maximum depth of 25 m and compared the results to the laser-based SHOALS bathymetry standard. We also compared the results derived from imaging spectroscopy to a more conventional 4-band multispectral dataset. The spectroscopic approach yielded consistent results on repeat flights, despite variability in viewing and solar geometries and sea state conditions. We found that the spectroscopy-based results were comparable to those derived from SHOALS, and they were a major improvement over the multispectral approach. Yet, spectroscopy provided much finer spatial information than that which is available with SHOALS, which is valuable for analyzing changes in benthic composition at the scale of individual coral colonies. Monitoring temporal changes in reef 3D complexity at high spatial resolution will provide an improved means to assess the impacts of climate change and coastal processes that affect reef complexity.

Rapid ‘Ōhi‘a Death (ROD) is a disease aggressively killing large numbers of Metrosideros polymorpha (‘ōhi‘a), a native keystone tree species on Hawaii Island. This loss threatens to deeply alter the biological make-up of this unique island ecosystem. Spatially explicit information about the present and past advancement of the disease is essential for its containment; yet, currently such data are severely lacking. To this end, we used the Carnegie Airborne Observatory to collect Laser-Guided Imaging Spectroscopy data and high-resolution digital imagery across >500,000 ha of Hawaii Island in June–July 2017. We then developed a method to map individual tree crowns matching the symptoms of both active (brown; desiccated ‘ōhi‘a crowns) and past (leafless tree crowns) ROD infection using an ensemble of two distinct machine learning approaches. Employing a very conservative classification scheme for minimizing false-positives, model sensitivity rates were 86.9 and 82.5, and precision rates were 97.4 and 95.3 for browning and leafless crowns, respectively. Across the island of Hawaii, we found 43,134 individual crowns suspected of exhibiting the active (browning) stage of ROD infection. Hotspots of potential ROD infection are apparent in the maps. The peninsula on the eastern side of Hawaii known as the Puna district, where the ROD outbreak likely originated, contained a particularly high density of brown crown detections. In comparison, leafless crown detections were much more numerous (547,666 detected leafless crowns in total) and more dispersed across the island. Mapped hotspots of likely ROD incidence across the island will enable scientists, administrators, and land managers to better understand both where and how ROD spreads and how to apply limited resources to limiting this spread.