Amoebozoa is the eukaryotic supergroup sister to Obazoa, the lineage that contains the animals and Fungi, as well as their protistan relatives, and the breviate and apusomonad flagellates. Amoebozoa is extraordinarily diverse, encompassing important model organisms and significant pathogens. Although amoebozoans are integral to global nutrient cycles and present in nearly all environments, they remain vastly understudied. We present a robust phylogeny of Amoebozoa based on broad representative set of taxa in a phylogenomic framework (325 genes). By sampling 61 taxa using culture-based and single-cell transcriptomics, our analyses show two major clades of Amoebozoa, Discosea, and Tevosa. This phylogeny refutes previous studies in major respects. Our results support the hypothesis that the last common ancestor of Amoebozoa was sexual and flagellated, it also may have had the ability to disperse propagules from a sporocarp-type fruiting body. Overall, the main macroevolutionary patterns in Amoebozoa appear to result from the parallel losses of homologous characters of a multiphase life cycle that included flagella, sex, and sporocarps rather than independent acquisition of convergent features.

Global loss of biodiversity is an ongoing process that concerns both local and global authorities. Studies of biodiversity mainly involve traditional methods using morphological characters and molecular protocols. However, conventional methods are a time consuming and resource demanding task. The development of high-throughput sequencing (HTS) techniques has reshaped the way we explore biodiversity and opened a path to new questions and novel empirical approaches. With the emergence of HTS, sequencing the complete mitochondrial genome became more accessible, and the number of genome sequences published has increased exponentially during the last decades. Despite the current state of knowledge about the potential of mitogenomics in phylogenetics, this is still a relatively under-explored area for a multitude of taxonomic groups, especially for those without commercial relevance, non-models organisms and with preserved DNA. Here we take the first step to assemble and annotate the genomes from HTS data using a new protocol of genome skimming which will offer an opportunity to extend the field of mitogenomics to under-studied organisms. We extracted genomic DNA from specimens preserved in ethanol. We used Nextera XT DNA to prepare indexed paired-end libraries since it is a powerful tool for working with diverse samples, requiring a low amount of input DNA. We sequenced the samples in two different Illumina platform (MiSeq or NextSeq 550). We trimmed raw reads, filtered and had their quality tested accordingly. We performed the assembly using a baiting and iterative mapping strategy, and the annotated the putative mitochondrion through a semi-automatic procedure. We applied the contiguity index to access the completeness of each new mitogenome. Our results reveal the efficiency of the proposed method to recover the whole mitogenomes of preserved DNA from non-model organisms even if there are gene rearrangement in the specimens. Our findings suggest the potential of combining the adequate platform and library to the genome skimming as an innovative approach, which opens a new range of possibilities of its use to obtain molecular data from organisms with different levels of preservation.

Bat flies were surveyed between March, 2007 and February, 2008, in the Carnijó Private Natural Heritage Reserve (08° 07′ S and 35° 05′ W), an area of Atlantic Rainforest in the municipality of Moreno, in the Brazilian state of Pernambuco. Bats were captured biweekly using mist nets set during six hours each night. The ectoparasites were collected with tweezers and/or a brush wet in ethanol and stored in 70% ethanol. The specimens are deposited in the zoological reference collection of the Federal University of Mato Grosso do Sul. Sixteen species of streblid bat flies were collected from 10 bat species of the family Phyllostomidae. Thirteen of the these streblid species were recorded for the first time in Pernambuco.

The Neotropical genus Noctiliostrebla Wenzel (Diptera: Streblidae) is revised after examination of the types of all nominal species, and 11 species are recognized. Seven new species are described, and a lectotype is designated for Lipoptena dubia Rudow. Resulting information on species distributions and host records can be summarized as follows: Noctiliostrebla dubia (Rudow) is restricted to the Amazon region and is a parasite of Noctilio leporinus (Linnaeus) (Chiroptera: Noctilionidae); Noctiliostrebla traubi Wenzel is restricted to Central America and northern South America, being the only species of the genus parasitizing N. leporinus in Central America; the distribution ranges of N. maai Wenzel and N. traubi are similar, but the host of N. maai is N. albiventris Desmarest; Noctiliostrebla aitkeni Wenzel is restricted to northern South America and has only been recorded as parasitizing N. leporinus; Noctiliostrebla ecuadorensis sp. n. occurs only in Ecuador, on N. albiventris; Noctiliostrebla guerreroi sp. n. has only been recorded from the Amazon region on N. albiventris; Noctiliostrebla falsispina sp. n. is restricted to south-central South America and is a parasite of N. leporinus; the distributions of N. lamasi sp. n. and N. falsispina sp. n. are similar, and the two species usually co-occur on N. leporinus; Noctiliostrebla morena sp. n. has a similar distribution to those of N. falsispina sp. n. and N. lamasi sp. n., but parasitizes N. albiventris; Noctiliostrebla pantaneira sp. n. has a similar distribution to N. morena sp. n. and usually co-occurs with it on N. albiventris; Noctiliostrebla caissara sp. n. is restricted to the southeastern coast of South America and is a parasite of N. leporinus. All species are included in a key and illustrated.

The SISBIOTA-BRASIL was a three-year multimillion-dollar research program of the Brazilian government to document plants and animals in endangered/understudied areas and biomes in Brazil. Distributional patterns and the historical events that generated them are extensively unknown regarding Brazilian fauna and flora. This deficiency hinders the development of conservation policies and the understanding of evolutionary processes. Conservation decisions depend on precise knowledge of the taxonomy and geographic distribution of species. Given such a premise, we proposed to research the diversity of Diptera of the Brazilian western arc of Amazon, Cerrado, and Pantanal in the states of Mato Grosso, Mato Grosso do Sul, and Rondônia. Three important biomes of the South American continent characterize these Brazilian states: Amazon forest, Cerrado (Brazilian Savannah), and Pantanal. Besides their ecological relevance, these biomes historically lack intensive entomological surveys. Therefore, they are much underrepresented in the Brazilian natural history collections and in the scientific literature, which is further aggravated by the fact that these areas are being exponentially and rapidly converted to commercial lands. Our project involved over 90 collaborators from 24 different Brazilian institutions and one from Colombia among researchers, postdocs, graduate and undergraduate students, and technicians. We processed and analyzed nearly 300,000 specimens from ~60 families of Diptera collected with a large variety of methods in the sampled areas. Here, we provide a detailed overview of the genera and species diversity of 41 families treated. Our results point to a total of 2,130 species and 514 genera compiled and identified for the three states altogether, with an increase of 41% and 29% in the numbers of species and genera known for the three states combined, respectively. Overall, the 10 most species-rich families were Tachinidae, Cecidomyiidae, Tabanidae, Psychodidae, Sarcophagidae, Stratiomyidae, Bombyliidae, Syrphidae, Tephritidae, and Asilidae. The 10 most diverse in the number of genera were Tachinidae, Stratiomyidae, Asilidae, Mycetophilidae, Syrphidae, Tabanidae, Muscidae, Dolichopodidae, Sarcophagidae, and Chloropidae. So far, 111 scientific papers were published regarding taxonomic, phylogenetic, and biogeographical aspects of the studied families, with the description of 101 new species and three new genera. We expect that additional publications will result from this investigation because several specimens are now curated and being researched by specialists.