The intestinal microbiota has received a lot of attention in recent times due to its essential role in the immune system development and function. Recent work in humans has demonstrated that the first year of life is the most critical time period for microbiome development with perturbations during this time being proven to have long term health consequences. In this review, we describe the literature surrounding early life events in humans and mice that contribute to intestinal microbiota development and function, and compare this to piglets predominantly during their lactation period, which focuses on the impact lactation management practices may have on the intestinal microbiota. Although extensive research has been conducted in this area in humans and mice, little research exists in pigs during perceivably the most critical time period of development, which is the lactation period. The research reviewed outlines the importance of appropriate intestinal microbiota development. However, further research is needed in order to understand the full extent routine farm practices have on a piglet’s intestinal microbiota.

Background: Porcine tonsils are the colonization site for many pathogenic as well as commensal microorganisms and are the primary lymphoid tissue encountered by organisms entering through the mouth or nares. The goal of this study was to provide an in-depth characterization of the composition and structure of the tonsillar microbial communities and to define the core microbiome in the tonsils of healthy pigs, using high throughput bar-coded 454-FLX pyrosequencing. Results: Whole tonsils were collected at necropsy from 12 16-week-old finisher pigs from two healthy herds. Tonsil brushes were also used to collect samples from four of these animals. Bacterial DNA was isolated from each sample, amplified by PCR with universal primers specific for the bacterial 16S rRNA genes, and the PCR products sequenced using pyrosequencing. An average of 13,000 sequences were generated from each sample. Microbial community members were identified by sequence comparison to known bacterial 16S rRNA gene sequences. The microbiomes of these healthy herds showed very strong similarities in the major components as well as distinct differences in minor components. Pasteurellaceae dominated the tonsillar microbiome in all animals, comprising ~60% of the total, although the relative proportions of the genera Actinobacillus, Haemophilus, and Pasteurella varied between the herds. Also found in all animals were the genera Alkanindiges, Peptostreptococcus, Veillonella, Streptococcus and Fusobacterium, as well as Enterobacteriaceae and Neisseriaceae. Treponema and Chlamydia were unique to Herd 1, while Arcanobacterium was unique to Herd 2. Tonsil brushes yielded similar results to tissue specimens, although Enterobacteriaceae and obligate anaerobes were more frequently found in tissue than in brush samples, and Chlamydia, an obligately intracellular organism, was not found in brush specimens. Conclusions: We have extended and supported our previous studies with 16S clone libraries, using 16S rRNA gene pyrosequencing to describe the microbial communities in tonsils of healthy pigs. We have defined a core microbiome, dominated by Pasteurellaceae, in tonsil specimens, and have also demonstrated the presence of unique minor components of the tonsillar microbiome present in each herd. We have validated the use of non-invasive tonsil brushes, in comparison to tonsil tissue, which will facilitate future studies.

As sows continue to be selected for greater prolificacy, it is important to review problems that arise in larger litters, and whether these issues can be appropriately managed. Although a proportion of piglets in larger litters can be born underweight, proper supervision around farrowing and adequate colostrum intake has the potential to improve the survival of low-birth-weight piglets and their ongoing growth to weaning. As larger litters can impart greater stress and discomfort on sows, implementing a low-stress environment leading up to parturition may improve sow performance and subsequent survival of piglets. Additionally, treating sows with anti-inflammatory compounds, either dietary or pharmacologically, shows some promise for alleviating sow discomfort and improving piglet survival in larger litters. Understanding that selecting sows for larger litters not only affects piglet survival but the well-being of the sow, the decision to continue selecting for larger litters, regardless of management strategies, remains a topic of ethical concern.

Increased attention on the effects of the global push for a larger litter size has focused on the increased occurrence of piglets with decreased viability, which have lighter birthweights and a reduced ability to thrive in early life. To improve their odds of survival, interventions must be timely and targeted. This requires the early identification of low-viability pigs and appropriate strategies to manage them. Using novel measures such as abdominal circumference and crown to the rump length in conjunction with birth weight may provide an improved protocol for the identification of those at most risk of preweaning mortality. Further, identifying these at-risk piglets allows interventions to increase their colostrum intake and heat provisions shortly following birth. The appropriate management of the pre- and post-partum sows will improve the chances of decreasing the number of piglets born with lower viability. However, this outcome is constrained by limitations in resources such as technology and staffing. If these challenges can be overcome, it will allow for greater control and increased effectiveness in the implementation of current and new management strategies.

The gastrointestinal tract microbiota is involved in the development and function of many body processes. Studies demonstrate that early-life microbial colonisation is the most important time for shaping intestinal and immune development, with perturbations to the microbiota during this time having long-lasting negative implications for the host. Piglets face many early-life events that shape the acquisition and development of their intestinal microbiota. The pork industry has a unique advantage in that the producer has a degree of control over what piglets are exposed to, providing conditions that allow for optimum piglet growth and development. An influx of publications within this area has occurred in recent times and with this, interest surrounding its application in pork production has increased. However, it can be difficult to distinguish which research is of most relevance to industry in terms of delivering repeatable and reliable production outcomes. In this review, we describe the literature surrounding research within pigs, predominantly during the preweaning period that has either provided solutions to industry problems or is generating information targeted at addressing relevant industry issues, with the focus being on studies demonstrating causation where possible. This review will provide a basis for the development of new studies targeted at understanding how to better support initial intestinal microbiota colonisation in order to improve piglet health and survival.

The ongoing selection for increased litter size has had significant impacts on sow husbandry practice. The present study investigated factors associated with farrowing duration and the proportion of sows that had prolonged farrowing in modern hyperprolific sows kept in a free farrowing system in a tropical environment. Farrowing data from 2493 Landrace x Yorkshire cross-bred sows in a commercial swine herd in Thailand were included in the study. The time of farrowing, parity number, litter size, and the birth status of each piglet were recorded. Farrowing duration was analysed using multiple analyses of variance. Total number of piglets born per litter (TB), parity, and time onset of farrowing were included in the statistical models. On average, TB, piglets born alive, and farrowing duration were 13.7, 12.1, and 221.0 min, respectively. Of these sows, 26.4% had TB ≥ 16 and 21.7% had a prolonged farrowing duration (≥300 min). Farrowing duration was positively correlated with TB (r = 0.141, p < 0.001), percentage of stillborn (SB) piglets per litter (r = 0.259, p < 0.001), percentage of mummified foetuses (MF) per litter (r = 0.049, p = 0.015), piglet birth weight (r = 0.068, p < 0.001), and litter birth weight (r = 0.041, p = 0.043). The proportion of SB per litter was higher and piglet birth weight lower in litters that had ≥16 TB than those with 8–12 TB (p < 0.05). The farrowing duration of sows with parity numbers 5–7 (247.7 ± 5.1 min) and 8–10 (237.1 ± 5.1 min) was longer than that of sows with parity numbers 1 (188.3 ± 5.2 min) and 2–4 (214.3 ± 3.9 min) (p < 0.05). Sows that had started farrowing during working hours had longer farrowing durations (229.3 ± 3.6 min) than those that had started farrowing during non-working hours (217.6 ± 3.4 min, p = 0.017). In multiparous sows, the duration of farrowing was positively correlated with the maximum temperature (r = 0.056, p = 0.012) and the maximum temperature–humidity index (r = 0.059, p = 0.008) in the 7 days before farrowing. The present data confirm that TB, sow parity, and time of onset of farrowing are significant risk factors for a prolonged farrowing.