Formal concept analysis (FCA) is a method based on lattice theory, widely used for data visualization, data analysis and knowledge discovery. Amino acids (AAs) are chemical molecules that constitute the proteins. In this paper is presented a new and easy way of visualizing of the structure and properties of AAs. In addition, we performed a new Hydrophobic-Polar classification of AAs using FCA. For this, the 20 proteinogenic AAs were clustered, classified by hydrophobicity and visualized in Hasse-diagrams. Exploring and processing the dataset was done with Elba and ToscanaJ, some FCA tools and Conceptual Information System (CIS).

Given the complexity and variability of gastrointestinal polyps, there is a growing need for more accurate machine-learning algorithms that can assist medical professionals in decision-making processes. In our study, we employed machine learning (ML) techniques to classify gastrointestinal polyps seen in colonoscopy images, that present a risk of colon cancer, affecting a large portion of the population. The dataset used in the research comprised 152 instances and included three types of lesions, totaling 76 polyps. The study consisted of applying Logistic Regression (LR) to classify gastrointestinal images. The principal motivation for choosing this algorithm consists in the fact that is preferred by many medical researchers. Another motivation consisted in the fact to compare the polyps classification accuracy of physicians and LR with optimized hyperparameters. The approached model performance was evaluated with the following metrics: Accuracy, Precision, Recall, F1_Score and Macro-average. We used the Multiclass Logistic Regression (mLR) classifier to classify polyps into hyperplastic (27.63%), serrated (19.74%), and adenoma lesions (52.63%). It should be noted that serrated polyps are hard to diagnose, even by physicians, because they have characteristics of both hyperplastic and adenoma ones. One of the objectives consisted in the study of the hyperparameters tunning of the Logistic Regression to find the best-fitted model. To check the influence of the data mix on the results obtained, for the two best models (LR with liblinear solver, L1 penalty and C = 0.01), it was performed a comprehensive statistical analysis. Based on an algorithm that admits obtaining accurate results. Such analyses are mistakenly applied in the scientific literature. The model with optimized hyperparameters achieved an accuracy score of 70.39%, indicating a reasonable level of prediction, surpassing both beginner and expert physicians and obtaining results similar to those obtained by Random Subspace and Random Forest. The model successfully classifies the hyperplastic and adenoma polyps but showed to have a more limited ability to predict the serrated ones.

In this study, we used the hydrophobic-polar (HP) two-dimensional square and three-dimensional cubic lattice models for the problem of protein structure prediction (PSP). This kind of lattice reduces computational time and calculations, the conformational space from $9^n$ to $3^{n-2}$ for the 2D square lattice and $5^{n-2}$ for the 3D cubic lattice. Even within this context, it remains challenging for genetic algorithms or other metaheuristics to identify the optimal solutions. The contributions of the paper consist of: (1) implementation of a high-performing novel genetic algorithm (GA); instead of considering only the self-avoiding walk (SAW) conformations approached in other work, we decided to allow any conformation to appear in the population at all stages of the proposed all conformations biomimetic genetic algorithm (ACGA). This increases the probability of achieving good conformations (self avoiding walk ones), with the lowest energy. In addition to classical crossover and mutation operators, (2) we introduced specific translation operators for these two operations. We have proposed and implemented an HP Protein Visualizer tool which offers interpretability, a hybrid approach in that the visualizer gives some insight to the algorithm, that analyse and optimise protein structures HP model. The program resulted based on performed research, provides a molecular modeling tool for studying protein folding using technologies such as Node.js, Express and p5js for 3D rendering, and includes optimization algorithms to simulate protein folding.

Proteins are the molecular machines that underlie the functioning of living organisms. Without knowing thethree-dimensional structure and sequence of the proteins, their functions cannot be predicted. The protein structureprediction consists in