Significance: Permafrost degradation may induce soil carbon (C) loss, critical for global C cycling, and be mediated by microbes. Despite larger C stored within the active layer of permafrost regions, which are more affected by warming, and the critical roles of Qinghai–Tibet Plateau in global C cycling, most previous studies focused on the permafrost layer and in high-latitude areas. Here, we demonstrate in situ that permafrost degradation alters the diversity and potentially decreases the stability of active layer microbial communities. Additionally, these changes are associated with soil C loss and potentially a positive C feedback. This study provides insights into microbial-mediated mechanisms responsible for C loss within the active layer in degraded permafrost, aiding in the modeling of C emission under future scenarios.

Water yield is a key ecosystem function index, directly impacting the sustainable development of the basin economy and ecosystem. Climate and land use/land cover (LULC) changes are the main driving factors affecting water yield. In the context of global climate change, assessing the impacts of climate and LULC changes on water yield in the alpine regions of the Qinghai–Tibet Plateau (QTP) is essential for formulating rational management and development strategies for water resources. On the basis of the Integrated Valuation of Ecosystem Services and Tradeoffs (InVEST) model, we simulated and analyzed the spatiotemporal variations and the impacts of LULC and climate changes on water yield from 2001 to 2019 in the upstream regions of the Shule River Basin (USRB) on the northeastern margin of the QTP. Three scenarios were designed in the InVEST model to clearly analyze the contributions of climate and LULC changes on the variation of water yield. The first scenario integrated climate and LULC change into the model according to the actual conditions. The second scenario was simulation without LULC change, and the third scenario was without climate change. The results showed that (1) the InVEST model had a good performance in estimating water yield (coefficient of determination (R²) = 0.986; root mean square error (RMSE) = 3.012, p < 0.05); (2) the water yield significantly increased in the temporal scale from 2001 to 2019, especially in the high altitude of the marginal regions (accounting for 32.01%), while the northwest regions significantly decreased and accounted for only 8.39% (p < 0.05); (3) the spatial distribution of water yield increased from the middle low-altitude regions to the marginal high-altitude regions; and (4) through the analysis of the three scenarios, the impact of climate change on water yield was 90.56%, while that of LULC change was only 9.44%. This study reveals that climate warming has a positive impact on water yield, which will provide valuable references for the integrated assessment and management of water resources in the Shule River Basin.

The Taklimakan Desert located in China is the second-largest shifting sand desert in the world and is known for its harsh conditions. Types of γ-rays or UV radiation-resistant bacterial strains have been isolated from this desert. However, there is no information regarding the proportions of the radiation-resistant strains in the total culturable microbes. We isolated 352 bacterial strains from nine sites across the Taklimakan Desert from north to south. They belong to Actinobacteria, Firmicutes, Proteobacteria, and Bacteroidetes. The phylum Actinobacteria was the most predominant in abundance and Firmicutes had the highest species richness. Bacteroidetes had the lowest abundance and was found in four sites only, while the other three phyla were found in every site but with different distribution profiles. After irradiating with 1000 J/m² and 6000 J/m² UV-C, the strains with survival rates higher than 10% occupied 72.3% and 36.9% of all culturable bacteria, respectively. The members from Proteobacteria had the highest proportions, with survival rates higher than 10%. After radiation with 10 kGy γ-rays, Kocuria sp. TKL1057 and Planococcus sp. TKL1152 showed higher radiation-resistant capabilities than Deinococcus radiodurans R1. Besides obtaining several radiation-resistant extremophiles, this study measured the proportions of the radiation-resistant strains in the total culturable microbes for the first time. This study may help to better understand the origin of radioresistance, especially by quantitatively comparing proportions of radiation-resistant extremophiles from different environments in the future.

Global alpine ecosystems contain a large amount of carbon, which is sensitive to global change. Changes to alpine carbon sources and sinks have implications for carbon and climate feedback processes. To date, few studies have quantified the spatial-temporal variations in ecosystem carbon storage and its response to global change in the alpine regions of the Qinghai-Tibet Plateau (QTP). Ecosystem carbon storage in the northeastern QTP between 2001 and 2019 was simulated and systematically analyzed using the Integrated Valuation of Ecosystem Services and Tradeoffs (InVEST) model. Furthermore, the Hurst exponent was obtained and used as an input to perform an analysis of the future dynamic consistency of ecosystem carbon storage. Our study results demonstrated that: (1) regression between the normalized difference vegetation index (NDVI) and biomass (coefficient of determination (R²) = 0.974, p < 0.001), and between NDVI and soil organic carbon density (SOCD) (R² = 0.810, p < 0.001) were valid; (2) the spatial distribution of ecosystem carbon storage decreased from the southeast to the northwest; (3) ecosystem carbon storage increased by 13.69% between 2001 and 2019, and the significant increases mainly occurred in the low-altitude regions; (4) climate and land use (LULC) changes caused increases in ecosystem carbon storage of 4.39 Tg C and 2.25 Tg C from 2001 to 2019, respectively; and (5) the future trend of ecosystem carbon storage in 92.73% of the study area shows high inconsistency but that in 7.27% was consistent. This study reveals that climate and LULC changes have positive effects on ecosystem carbon storage in the alpine regions of the QTP, which will provide valuable information for the formulation of eco-environmental policies and sustainable development.

Permafrost microorganisms have received increased attention due to their critical role in biogeochemical cycles and the potential biosafety risks associated with climate warming. However, knowledge regarding the depth-related community structure and function of permafrost microorganisms remains limited. In this study, we employed metagenomic methods to investigate microbial communities, functional genes, and their controlling factors in alpine permafrost of the Shule River headwaters on the northeastern margin of the Qinghai-Tibet Plateau. A total of 287 metagenome-assembled genomes were constructed, representing 20 bacterial phyla and 1 archaeal phylum. Additionally, we identified 2079 viral contigs spanning more than 14 viral families, with approximately 67% constituting previously unknown taxa, forming a unique virome in alpine permafrost compared to other regions. Significant variations in bacterial and viral compositions, along with their metabolic potentials, were observed across vertical profiles from the active layer to the permafrost table layer. Viral diversity showed an initial increase followed by a decrease, reaching the maximum at the depth of 90-140 cm. We identified abundant genomic capabilities related to carbon, nitrogen, and sulfur cycling. Moreover, our analysis revealed 60 auxiliary metabolic genes in viruses and 7,000 putative biosynthetic gene clusters for secondary metabolites from 21 prokaryotic phyla. Soil temperature emerged as the most significant environmental variable influencing the composition of microbial communities and functional genes, as well as the diversity of microbial communities. These results offer valuable insights into the potential functional transformations and biosafety risks mediated by permafrost microorganisms under future warming.