In this work, we describe the transcriptional profiles of preadapted and non-adapted one-month-old juvenile Baikal whitefish after heat shock exposure. Preadapted fish were exposed to a repeated thermal rise of 6 °C above the control temperature every three days throughout their embryonic development. One month after hatching, preadapted and non-adapted larvae were either kept at control temperatures (12 °C) or exposed to an acute thermal stress (TS) of 12 °C above the control temperature. In response to this acute stress, an increase in HSP gene expression (HSP-30, HSP-40, HSP-47, HSP-70, and HSP-90) and TRIM16 was detected, independent of preadaptation. The expression levels of genes responsible for the response to oxygen levels, growth factors and the immune response, HBA, HBB, Myosin VI, Myosin VII, MHC, Plumieribetin, TnI, CYP450, and LDB3 were higher in individuals that had previously undergone adaptation. Genes responsible for the regulation of metabolism, MtCK, aFGF, ARF, CRYGB, and D-DT, however, increased their activity in non-adapted individuals. This information on transcriptional profiles will contribute to further understanding of the mechanisms of adaptation of whitefish to their environment.

Acclimation through the hormesis effect increases the plasticity of organisms, which has been shown for many ectothermic animals, including fish. We investigated the effect of temperature acclimation in Baikal whitefish Coregonus baicalensis (Dybowski, 1874). Telomere length, telomerase activity, and the expression of genes, whose products are involved in the regulation of telomere length and defense against reactive oxygen species, were selected to assess the state of the larvae. Acclimation and acute temperature stress (+12 °C) had no effect on telomere length, but altered telomerase activity (acclimation decreased it; stress increased it) and the levels of genes expression. Under stress, the expression of superoxide dismutase genes was increased in acclimated larvae and that of glutathione peroxidases in non-acclimated larvae, which may indicate lower reactive oxygen species formation and slower antioxidant responses in acclimated fish. The expression of some telomere-related genes was reduced under temperature stress, but the expression of the tzap and smg genes, whose products improve the control of telomere length by preventing them from lengthening or shortening, was increased in acclimated individuals. The data obtained indicate a positive effect of acclimation on the state of the Baikal whitefish larvae by remodulation of their telomerase activity and the transcriptional profile.

The light spectrum is a key factor in aquaculture, but its effects on molecular stress responses during early fish development are unclear. This study examined how light of different wavelengths (spectra) affects embryos of Baikal whitefish Coregonus baicalensis and its hybrid with Yenisei hump-snout whitefish C. fluviatilis. Eggs were incubated from 35 days post-fertilization under white light (1.8 and 20 µmol m⁻² s⁻¹), darkness, red (peak at 631 nm), green (peak at 507 nm) and blue (peak at 459 nm) light. We analyzed relative telomere length, telomerase activity, blood profiles, and expression of stress-related genes (HSP-90, MtCK) at key developmental stages. Notably, a significant increase in telomere length was observed throughout early development (from embryo to larva to fry), independent of the light spectrum. Red light and darkness acted as potent stressors, indicating proteotoxic stress and energy imbalance. In Baikal whitefish, this was accompanied by notable telomere shortening at the earliest stage and elongation at later stages under certain conditions, potentially mediated by increased telomerase activity, a response that may be metabolically costly. Conversely, green light was the most neutral. The effect of blue light differed between Baikal whitefish and its hybrid, with the hybrid proving more sensitive. Furthermore, high-intensity white light (20 µmol m⁻² s⁻¹) also induced negative effects in the hybrid, such as increased telomere length, suggesting that excessive irradiance itself can be a stressor, independent of spectral composition. We conclude that darkness or a predominance of red light is suboptimal for incubating these whitefish, while green light provides a more favorable environment, offering a basis for optimizing aquaculture light conditions.

Understanding the molecular mechanisms that enable vertebrate adaptation to deep-water environments remains a central goal in evolutionary biology. This study used comparative transcriptomics of skeletal muscle tissue to investigate these mechanisms in four endemic sculpin fish species (Cottoidei) from Lake Baikal, which inhabit different depth niches ranging from pelagic to benthic-abyssal zones up to 1642 m. Pelagic species showed increased activity in genes involved in sarcomere structure, calcium handling, and motor proteins, indicating adaptations for sustained locomotion. In contrast, deep-benthic specialists showed enrichment in pathways for glycolytic metabolism, proteasome function, and ubiquitination, reflecting adaptations for energy efficiency and protein homeostasis in a high-pressure environment. We conclude that the colonization of the Baikal abyssal zone by sculpins relies on a suite of shared molecular mechanisms, with distinct ecological pressures driving specific transcriptional changes in motility, metabolic strategy, and cellular integrity. This study provides a systems-level model for deep-water adaptation in vertebrates.