Deep, hot, and more alive than we thought: Marine sediments represent a massive microbial ecosystem, but we still do not fully understand what factors shape and limit life underneath the seafloor. Analyzing samples from a subduction zone off the coast of Japan, Heuer et al. found that microbial life, in particular bacterial vegetative cells, decreases as depth and temperature increases down to ∼600 meters below the seafloor, corresponding to temperatures of ∼70°C. Below this limit, endospores are common—a remnant, and a potential reservoir, of bacterial life. Deeper still is a sterile zone, and below 1000 meters is a scalding realm populated by vegetative cells. At such great depths, high concentrations of acetate and sulfate coexist, and there are also signs of hyperthermophilic methanogenesis. These data provide a fascinating window into an extreme and inhospitable environment that nonetheless supports microbial life. Science , this issue p. 1230

Microbial life inhabiting subseafloor sediments plays an important role in Earth’s carbon cycle. However, the impact of geodynamic processes on the distributions and carbon-cycling activities of subseafloor life remains poorly constrained. We explore a submarine mud volcano of the Nankai accretionary complex by drilling down to 200 m below the summit. Stable isotopic compositions of water and carbon compounds, including clumped methane isotopologues, suggest that ~90% of methane is microbially produced at 16° to 30°C and 300 to 900 m below seafloor, corresponding to the basin bottom, where fluids in the accretionary prism are supplied via megasplay faults. Radiotracer experiments showed that relatively small microbial populations in deep mud volcano sediments (10² to 10³ cells cm⁻³) include highly active hydrogenotrophic methanogens and acetogens. Our findings indicate that subduction-associated fluid migration has stimulated microbial activity in the mud reservoir and that mud volcanoes may contribute more substantially to the methane budget than previously estimated.

Recent explorations of scientific ocean drilling have revealed the presence of microbial communities persisting in sediments down to ~2.5 km below the ocean floor. However, our knowledge of these microbial populations in the deep subseafloor sedimentary biosphere remains limited. Here, we present a cultivation experiment of 2-km-deep subseafloor microbial communities in 20-million-year-old lignite coalbeds using a continuous-flow bioreactor operating at 40 °C for 1029 days with lignite particles as the major energy source. Chemical monitoring of effluent samples via fluorescence emission-excitation matrices spectroscopy and stable isotope analyses traced the transformation of coalbed-derived organic matter in the dissolved phase. Hereby, the production of acetate and ¹³C-depleted methane together with the increase and transformation of high molecular weight humics point to an active lignite-degrading methanogenic community present within the bioreactor. Electron microscopy revealed abundant microbial cells growing on the surface of lignite particles. Small subunit rRNA gene sequence analysis revealed that diverse microorganisms grew in the bioreactor (e.g., phyla Proteobacteria, Firmicutes, Chloroflexi, Actinobacteria, Bacteroidetes, Spirochaetes, Tenericutes, Ignavibacteriae, and SBR1093). These results indicate that activation and adaptive growth of 2-km-deep microbes was successfully accomplished using a continuous-flow bioreactor, which lays the groundwork to explore networks of microbial communities of the deep biosphere and their physiologies.

Widespread diagenesis of clay minerals occurs in deeply buried marine sediments under high-temperature and high-pressure conditions. For example, the smectite-to-illite (S-I) transformation has been often observed in sediments at in situ temperatures above ~60°C. However, it remains largely unknown whether such diagenetic processes naturally occur in relatively shallow and low-temperature sediments and, if so, what the consequences are of any related chemical reactions to the geochemical characteristics in the deep biosphere. We evaluated the possibility of naturally occurring S-I transformation at temperatures below 40°C in continental slope sediments of the Bering Sea by examining porewater chemistry, clay mineralogy, and chemical composition of clay minerals measured to ~800 m beneath the seafloor (mbsf) in core samples acquired during Integrated Ocean Drilling Program Expedition 323. In porewater from these cores, chloride concentrations decreased with increasing depth from 560 mM near the seafloor to 500 mM at ~800 mbsf; δ¹⁸O increased from 0 to 1.5‰; and δD decreased from −1 to −9‰. These trends are consistent with the addition of water derived from S-I transformation. The discrete low Cl⁻ spikes observed between ~200 and ~450 mbsf could be attributed to the dissociation of methane hydrate. X-ray diffraction analysis of the clay-size fraction (<2 μm) showed an increase of illite content in the I/S mixed layer with increasing depth to 150 mbsf. This increase may imply the occurrence of S-I transformation. The decrease of Fe³⁺/Fe²⁺ in the clay-size fraction with increasing depth strongly suggests microbial reduction of Fe(III) in clay minerals with burial, which also has the potential to promote the S-I transformation. Our results imply the significant ecological roles on the diagenesis of siliciclastic clay minerals underlying the high-productivity surface seawater at continental margins.

Detailed reconstruction of Indian summer monsoons is necessary to better understand the late Quaternary climate history of the Bay of Bengal and Indian peninsula. We established a chronostratigraphy for a sediment core from Hole 19B in the western Bay of Bengal, extending to approximately 80 kyr BP and examined major and trace element compositions and clay mineral components of the sediments. Higher δ¹⁸O values, lower TiO₂ contents, and weaker weathering in the sediment source area during marine isotope stages (MIS) 2 and 4 compared to MIS 1, 3, and 5 are explained by increased Indian summer monsoonal precipitation and river discharge around the western Bay of Bengal. Clay mineral and chemical components indicate a felsic sediment source, suggesting the Precambrian gneissic complex of the eastern Indian peninsula as the dominant sediment source at this site since 80 kyr. Trace element ratios (Cr/Th, Th/Sc, Th/Co, La/Cr, and Eu/Eu*) indicate increased sediment contributions from mafic rocks during MIS 2 and 4. We interpret these results as reflecting the changing influences of the eastern and western branches of the Indian summer monsoon and a greater decrease in rainfall in the eastern and northeastern parts of the Indian peninsula than in the western part during MIS 2 and 4.