Bacteria are essential in arsenic cycling. However, few studies have addressed 16S rRNA and arsenic-related functional gene diversity in long-term arsenic-contaminated tropical sediment. Here, using culture-based, metagenomic and computational approaches, we describe the diversity of bacteria, genes and enzymes involved in AsIII and AsV transformation in freshwater sediment and in anaerobic AsIII- and AsV-enrichment cultures (ECs). The taxonomic profile reveals significant differences among the communities. Arcobacter, Dechloromonas, Sedimentibacter and Clostridium thermopalmarium were exclusively found in ECs, whereas Anaerobacillus was restricted to AsV-EC. Novel taxa that are both AsV-reducers and AsIII-oxidizers were identified: Dechloromonas, Acidovorax facilis, A. delafieldii, Aquabacterium, Shewanella, C. thermopalmarium and Macellibacteroides fermentans. Phylogenic discrepancies were revealed among the aioA, arsC and arrA genes and those of other species, indicating horizontal gene transfer. ArsC and AioA have sets of amino acids that can be used to assess their functional and structural integrity and familial subgroups. The positions required for AsV reduction are conserved, suggesting strong selective pressure for maintaining the functionality of ArsC. Altogether, these findings highlight the role of freshwater sediment bacteria in arsenic mobility, and the untapped diversity of dissimilatory arsenate-reducing and arsenate-resistant bacteria, which might contribute to arsenic toxicity in aquatic environments.

The assessment of the diversity of habitats and the characterisation of the functional trophic groups of benthic macroinvertebrate communities of some rivers of Serra do Cipó (MG) were the main objectives of this study. The available trophic resources and the types of substrata were characterised along with the structure and composition of their using functional trophic groups. Serra do Cipó is a watershed divisor of the São Francisco and Doce River basins, including a series of streams and rivers, of good water quality and well preserved ecological characteristics. Samples were collected in Cipó, Peixe and Preto do Itambé rivers, besides the Indaiá and Capão da Mata streams at 26 sampling stations, during the rainy (February) and dry (October) seasons of 1998, using "Kicking nets" of 0.125 mm mesh size. The group of collectors (Baetidae, Leptophlebiidae and Leptohyphidae) was the most abundant, followed by collector-predators (Hydrophilidae, Ceratopogonidae, Chironomidae-Tanypodinae), and detritivorous-herbivores (Oligochaeta). The riparian vegetation, together with the aquatic macrophytes, are the substrata containing the highest richness of functional trophic groups and the higher habitat diversity. The results suggest that the use of functional trophic groups, together with habitat evaluation, are efficient tools in the evaluation of the diversity of benthic macroinvertebrates, particularly in altitudinal lotic ecosystems.

Here, we describe the metagenome and functional composition of a microbial community in a historically metal-contaminated tropical freshwater stream sediment. The sediment was collected from the Mina Stream located in the Iron Quadrangle (Brazil), one of the world’s largest mining regions. Environmental DNA was extracted and was sequenced using SOLiD technology, and a total of 7.9 Gbp was produced. A taxonomic profile that was obtained by comparison to the Greengenes database revealed a complex microbial community with a dominance of Proteobacteria and Parvarcheota. Contigs were recruited by bacterial and archaeal genomes, especially Candidatus Nitrospira defluvii and Nitrosopumilus maritimus, and their presence implicated them in the process of N cycling in the Mina Stream sediment (MSS). Functional reconstruction revealed a large, diverse set of genes for ammonium assimilation and ammonification. These processes have been implicated in the maintenance of the N cycle and the health of the sediment. SEED subsystems functional annotation unveiled a high degree of diversity of metal resistance genes, suggesting that the prokaryotic community is adapted to metal contamination. Furthermore, a high metabolic diversity was detected in the MSS, suggesting that the historical arsenic contamination is no longer affecting the prokaryotic community. These results expand the current knowledge of the microbial taxonomic and functional composition of tropical metal-contaminated freshwater sediments.

In order to verify the cascade-system effect in benthic macroinvertebrate communities, and the implications for policy making and proposals for conservation and sustainable use of the lower portion of São Francisco river basin (Bahia State, Brazil), a three-reservoir cascade system including two stretches downstream were studied during dry (June, 1997) and rainy (March, 1998) periods. The dominant groups found were Mollusca (Melanoides tuberculata), Oligochaeta, and Chironomidae larvae. Low Shannon-Wiener and Pielou index values were found, but with no significant difference between the sampling periods. However, density and taxonomic richness were significantly different (t(0.05; 31) = -2.1945; p < 0.05; e t(0.05; 31) = -3.0600; p < 0.01) between the sampling periods, with a reduction in the number of taxaand macroinvertebrate abundance during the rainy period. An increasing gradient in benthic macroinvertebrate community structures was noted along the reservoir cascade from the first reservoir (Apolônio Sales), followed by a decrease downstream from the third reservoir of the system (Xingó). Despite the negative consequences of rapid proliferation of dams, which have caused widespread loss of freshwater habitats, the reservoir cascade system promoted an increase in benthic macroinvertebrate diversity, due to water-quality improvement along the system.