Yin Ya Qi

Dr. Yin Ya Qi


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2020 in Canadian Journal of Animal Science
Verified
Journal Article
Closed access
LZLi Zhang
Li Zhang
HLHui Li
Hui Li
JGJingwen Gao
Jingwen Gao
JGJianpeng Gao
Jianpeng Gao
DWDianhua Wei
Dianhua Wei
YQYin Ya Qi
Yin Ya Qi
This study examined the presence and the antibiotic resistance patterns of Enterococcus faecalis isolated from the feces of 285 animals. Polymerase chain reaction tests verified the presence of E. faecalis from 49 pigs, 20 cows, 174 sheep, 17 horses, 21 chickens, and four dung beetles. Bacterial strains from different animals showed differences in susceptibility and resistance to the tested antimicrobials. The isolates exhibited resistance to ampicillin (6.32%), ciprofloxacin (40.00%), nitrofurantoin (1.40%), erythromycin (54.04%), streptomycin (82.11%), tetracycline (45.26%), amoxicillin (64.91%), penicillin (92.28%), and vancomycin (0.35%). The resistant strains also possessed varying complements of resistance genes including tem (77.89%), tetM (33.68%), gyrA (37.54%), parC (34.74%), aph(3′)-III (22.46%), aac(6′)/aph2″ (10.88%), and ant(6′)-I (8.42%). Genes for vancomycin resistance (vanB and vanC) and erythromycin resistance (mefA) were not detected. These results indicate high levels of antibiotic resistance among the isolates, although no positive correlation was observed between resistance genes and antibiotic resistance spectrum.

1 July 2024 in Fermentation
Verified
Journal Article
Open access
PDF file
YWYong Wei
Yong Wei
KLKun Liu
Kun Liu
YLYaao Li
Yaao Li
ZLZhixing Li
Zhixing Li
TZTianyu Zhao
Tianyu Zhao
ZWZongyuan Wang
Zongyuan Wang
In large-scale dairy farming, the use of high-temperature-fermented dairy manure bedding instead of rice husk-based bedding and other commercial types of bedding is widely favored. Strip-stacking aerobic fermentation is the main production method of dairy manure bedding, but it has problems including unstable fermentation and the secondary breeding of pathogens. In this work, a multi-probe, integrated, online monitoring system for temperature and relative humidity was used for fermentation process optimization. The effects of the temporal and spatial distribution of fermentation temperature and relative humidity on the nutrient content curve and the moisture and ash content of manure bedding materials were systematically studied. The effect of the fermentation process on the retention rate of effective bedding materials (cellulose, hemicellulose, and lignin) was analyzed. The experiments proved that high-quality bedding material can be obtained through reasonable stacking fermentation. The fabricated bedding material has a total dry base content consisting of cellulose, hemicellulose, and lignin of 78%, an ash content of 6%, and a nutrient content of 17%. The obtained bedding material was produced to increase the bed rest rate and continuously inhibit the bedding bacteria content, keeping it at a low level for 5 days. This study proves that temperature and humidity monitoring can guide the optimization of the strip-stacking fermentation process of dairy manure and that it can be applied to large-scale farms to improve fermentation parameters.

20 June 2025 in Microorganisms
Verified
Journal Article
Open access
PDF file
YSYingchao Sun
Yingchao Sun
YCYongcheng Chen
Yongcheng Chen
ZHZhiwei Huo
Zhiwei Huo
GLGuohong Liu
Guohong Liu
晓郑晓凯 郑
晓凯 郑
Fanfan ZhangFanfan Zhang
Fanfan Zhang
Lactic acid bacteria (LAB) and cellulase have been used as additives to improve the fermentation quality of mulberry silage. This study investigated the dynamics of fermentation characteristics and bacterial communities during 60-day ensiling through three established treatment groups: Control (no inoculation), Lactiplantibacillus plantarum (LP) inoculation as well as combination of L. plantarum and cellulase inoculation group (LPC). The results showed that compared with the Control group, the LP and LPC treatments significantly reduced the loss of dry matter, soluble carbohydrates, and crude protein (p < 0.05), effectively promoted the accumulation of lactic acid and acetic acid (p < 0.05), but significantly elevated ammonia nitrogen (NH3-N) production. Inoculation was beneficial to the stability of the bacterial community in mulberry branch and leaf silage because it can maintain a high level of beneficial bacteria (Lactiplantibacillus) and inhibit the growth of harmful bacteria (Escherichia-Shigella). The combination of the inoculation of L. plantarum and cellulase may improve the quality of mulberry branch silage.

12 September 2025 in Veterinary Sciences
Verified
Journal Article
Open access
PDF file
MCMengyuan Cao
Mengyuan Cao
FCFang Cao
Fang Cao
CWChenyu Wang
Chenyu Wang
XYXueqi Yan
Xueqi Yan
FDFeng Dong
Feng Dong
YQYin Ya Qi
Yin Ya Qi
This study aimed to investigate the antimicrobial resistance, virulence gene profile, and pathogenicity of Enterococcus faecium isolated from a large-scale cattle farm in Xinjiang, China, to provide a scientific basis for the prevention and control of E. faecium infections in the region. Nineteen rectal swabs were aseptically collected from diarrheic calves for bacterial isolation. Isolates were identified through morphological observation, biochemical characterization, and PCR amplification. Homology analysis was conducted using 16S rRNA gene sequencing. Antimicrobial susceptibility was evaluated by the disk diffusion method, and key virulence genes were detected using PCR. Pathogenicity was assessed through intraperitoneal inoculation of mice, followed by histopathological examination. Three isolates were identified as E. faecium, consistent with morphological and molecular results. Biochemical tests indicated that the strains could metabolize sucrose, maltose, lactose, melibiose, and raffinose, but not sorbitol. Phylogenetic analysis revealed that isolates SCQ3 and SCQ4 shared 99.3% homology with E. faecium strain MF678878.1, while SCQ11 showed 91% similarity to strain JP2. Antimicrobial susceptibility testing indicated that SCQ11 was resistant to vancomycin. PCR analysis identified the presence of multiple virulence genes, including psaA, hyp, asal, sprE, nuc, cbh, srtA, hyl, scm, and agg. In vivo pathogenicity testing demonstrated that the vancomycin-resistant strain exhibited strong virulence in mice, with gross lesions observed in the liver, spleen, and intestines. Histopathological examination confirmed varying degrees of tissue damage, particularly in the liver and spleen. All three E. faecium isolates exhibited multidrug resistance, with one strain showing vancomycin resistance and harboring a high number of virulent genes. This strain demonstrated significant pathogenicity in vivo. These findings highlight the potential public health threat posed by multidrug-resistant E. faecium in livestock and provide essential data for regional prevention and control strategies.

2 March 2026 in Methods and Protocols
Verified
Journal Article
Open access
PDF file
LQLi Wei Qi
Li Wei Qi
YWYongjie Wang
Yongjie Wang
BQBorui Qi
Borui Qi
LYLIN YANG
LIN YANG
XMXin Ma
Xin Ma
SAShilei Author:(张石磊)
Shilei Author:(张石磊)
This study aimed to establish an indirect ELISA for detecting the avian reovirus (ARV) epidemic strain xj-1.1 by using the purified recombinant protein pET-σC as the coating antigen. To optimize assay performance, key parameters were systematically evaluated, including antigen-coating concentration, serum dilution, blocking reagent and duration, serum incubation time, and the dilution and reaction time of the HRP-conjugated secondary antibody. The optimized conditions identified were a coating antigen dilution of 1:100, serum dilution of 1:1600, coating at 37 °C for 1 h followed by overnight incubation at 4 °C, and blocking with 5% skim milk for 2 h. The optimal serum incubation time was 1.5 h, with the secondary antibody diluted 1:1000 and incubated for 2 h, followed by a 20-min color development step. The cut-off value for distinguishing positive and negative samples was determined to be 0.121. Validation of the assay demonstrated favorable specificity, sensitivity, and repeatability, indicating that the developed indirect ELISA provides a reliable method for detecting ARV xj-1.1 infection.