Mosquito-borne diseases pose significant public health challenges, necessitating inno-vative and sustainable control measures. This study evaluates the larvicidal potential of six extremophile Bacillus species against Aedes aegypti larvae, focusing on dose-response relationships, resistance trends, and genetic diversity. Regression analy-sis revealed a significant positive correlation between concentration and larval mortal-ity across species, with B. sonorensis and B. paramycoides demonstrating superior po-tency at lower concentrations (LC₅₀: 19.72 ppm and 23.41 ppm, respectively). Probit analysis confirmed that B. sonorensis is the most effective larvicide, achieving high mortality rates with minimal concentrations. In contrast, B. licheniformis and B. ster-coris exhibited limited efficacy, requiring significantly higher doses to achieve compa-rable results. Resistance analysis highlighted an inverse relationship between toxicity index and resistance ratio, with B. sonorensis maintaining high efficacy even in re-sistant mosquito populations (Resistance Ratio: 1). Furthermore, phylogenetic analysis based on 16S rRNA gene sequences revealed distinct evolutionary relationships among species, with B. rugosus and B. tequilensis clustering closely, suggesting functional similarities. The genetic divergence of B. licheniformis aligns with its lower larvicidal performance. Overall, this study underscores the potential of B. sonorensis and B. paramycoides as robust candidates for mosquito control programs, particularly in re-sistance-prone environments. The findings provide valuable insights into optimizing microbial larvicides by tailoring species-specific application strategies and leveraging genetic diversity within the Bacillus genus.