Reed Johnson

Dr. Reed Johnson

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Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 October 2006 in Insect Molecular Biology
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Journal Article
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CCCharles Claudianos
Charles Claudianos
HRHilary Ranson
Hilary Ranson
RJReed Johnson
Reed Johnson
SBS. Biswas
S. Biswas
MSM. A. Schuler
M. A. Schuler
JOJ. G. Oakeshott
J. G. Oakeshott
The honeybee genome has substantially fewer protein coding genes (≈ 11 000 genes) than Drosophila melanogaster (≈ 13 500) and Anopheles gambiae (≈ 14 000). Some of the most marked differences occur in three superfamilies encoding xenobiotic detoxifying enzymes. Specifically there are only about half as many glutathione‐S‐transferases (GSTs), cytochrome P450 monooxygenases (P450s) and carboxyl/cholinesterases (CCEs) in the honeybee. This includes 10‐fold or greater shortfalls in the numbers of Delta and Epsilon GSTs and CYP4 P450s, members of which clades have been recurrently associated with insecticide resistance in other species. These shortfalls may contribute to the sensitivity of the honeybee to insecticides. On the other hand there are some recent radiations in CYP6, CYP9 and certain CCE clades in A. mellifera that could be associated with the evolution of the hormonal and chemosensory processes underpinning its highly organized eusociality.

12 April 2010 in Apidologie
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Journal Article
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RJReed Johnson
Reed Johnson
MEMarion D. Ellis
Marion D. Ellis
CMChristopher A. Mullin
Christopher A. Mullin
MFMaryann Frazier
Maryann Frazier

21 June 2010 in Proceedings of the National Academy of Sciences
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EKEwen F. Kirkness
Ewen F. Kirkness
BHBrian J. Haas
Brian J. Haas
WSWeilin Sun
Weilin Sun
Henk R BraigHenk R Braig
Henk R Braig
MPM. Alejandra Perotti
M. Alejandra Perotti
BPBarry R. Pittendrigh
Barry R. Pittendrigh
As an obligatory parasite of humans, the body louse ( Pediculus humanus humanus ) is an important vector for human diseases, including epidemic typhus, relapsing fever, and trench fever. Here, we present genome sequences of the body louse and its primary bacterial endosymbiont Candidatus Riesia pediculicola. The body louse has the smallest known insect genome, spanning 108 Mb. Despite its status as an obligate parasite, it retains a remarkably complete basal insect repertoire of 10,773 protein-coding genes and 57 microRNAs. Representing hemimetabolous insects, the genome of the body louse thus provides a reference for studies of holometabolous insects. Compared with other insect genomes, the body louse genome contains significantly fewer genes associated with environmental sensing and response, including odorant and gustatory receptors and detoxifying enzymes. The unique architecture of the 18 minicircular mitochondrial chromosomes of the body louse may be linked to the loss of the gene encoding the mitochondrial single-stranded DNA binding protein. The genome of the obligatory louse endosymbiont Candidatus Riesia pediculicola encodes less than 600 genes on a short, linear chromosome and a circular plasmid. The plasmid harbors a unique arrangement of genes required for the synthesis of pantothenate, an essential vitamin deficient in the louse diet. The human body louse, its primary endosymbiont, and the bacterial pathogens that it vectors all possess genomes reduced in size compared with their free-living close relatives. Thus, the body louse genome project offers unique information and tools to use in advancing understanding of coevolution among vectors, symbionts, and pathogens.

5 June 2015 in Science
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Journal Article
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KKKaren M. Kapheim
Karen M. Kapheim
HPHailin Pan
Hailin Pan
CLCai Li
Cai Li
SSSteven L. Salzberg
Steven L. Salzberg
DPDaniela Puiu
Daniela Puiu
GZGuojie Zhang
Guojie Zhang
For bees, many roads lead to social harmony: Eusociality, where workers sacrifice their reproductive rights to support the colony, has evolved repeatedly and represents the most evolved form of social evolution in insects. Kapheim et al. looked across the genomes of 10 bee species with varying degrees of sociality to determine the underlying genomic contributions. No one genomic path led to eusociality, but similarities across genomes were seen in features such as increases in gene regulation and methylation. It also seems that selection pressures relaxed after the emergence of complex sociality. Science , this issue p. 1139

24 April 2015 in Genome Biology
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BSBen M Sadd
Ben M Sadd
SBSeth Barribeau
Seth Barribeau
Guy BlochGuy Bloch
Guy Bloch
Dirk de GraafDirk de Graaf
Dirk de Graaf
PDPeter Dearden
Peter Dearden
KWKim C Worley
Kim C Worley
Background: The shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality genomic data will inform key aspects of bumblebee biology, including susceptibility to implicated population viability threats. Results: We report the high quality draft genome sequences of Bombus terrestris and Bombus impatiens, two ecologically dominant bumblebees and widely utilized study species. Comparing these new genomes to those of the highly eusocial honeybee Apis mellifera and other Hymenoptera, we identify deeply conserved similarities, as well as novelties key to the biology of these organisms. Some honeybee genome features thought to underpin advanced eusociality are also present in bumblebees, indicating an earlier evolution in the bee lineage. Xenobiotic detoxification and immune genes are similarly depauperate in bumblebees and honeybees, and multiple categories of genes linked to social organization, including development and behavior, show high conservation. Key differences identified include a bias in bumblebee chemoreception towards gustation from olfaction, and striking differences in microRNAs, potentially responsible for gene regulation underlying social and other traits. Conclusions: These two bumblebee genomes provide a foundation for post-genomic research on these key pollinators and insect societies. Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation.

1 August 2015 in Current Opinion in Insect Science
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Journal Article
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MBMay Berenbaum
May Berenbaum
RJReed Johnson
Reed Johnson