Gary J. Patti

Prof. Gary J. Patti


Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 March 2012 in Nature Reviews Molecular Cell Biology
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GPGary J. Patti
Gary J. Patti
OYOscar Yanes
Oscar Yanes
GSGary Siuzdak
Gary Siuzdak

10 September 2012 in Nature Biotechnology
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RTRalf Tautenhahn
Ralf Tautenhahn
KCKevin Cho
Kevin Cho
WUWinnie Uritboonthai
Winnie Uritboonthai
ZZZhengjiang Zhu
Zhengjiang Zhu
GPGary J. Patti
Gary J. Patti
GSGary Siuzdak
Gary Siuzdak

7 February 2013 in Nature Protocols
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Journal Article
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ZZZheng-Jiang Zhu
Zheng-Jiang Zhu
ASAndrew W Schultz
Andrew W Schultz
JWJunhua Wang
Junhua Wang
Caroline JohnsonCaroline Johnson
Caroline Johnson
SYSteven M Yannone
Steven M Yannone
GSGary Siuzdak
Gary Siuzdak

22 April 2021 in Science
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Journal Article
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MYMihoko Yoshino
Mihoko Yoshino
JYJun Yoshino
Jun Yoshino
BKBrandon D. Kayser
Brandon D. Kayser
GPGary J. Patti
Gary J. Patti
MFMichael P. Franczyk
Michael P. Franczyk
SKSamuel Klein
Samuel Klein
Anti-aging supplement effects in humans: Synthesis of nicotinamide adenine dinucleotide (NAD + ) decreases during aging, which is thought to limit the activity of enzymes that require it for their catalytic activity. Studies in animals indicate that replenishment of cellular NAD + can have beneficial effects on aging and age-related diseases, but the situation in humans is less clear. Yoshino et al. report the effects of supplementation with the NAD + precursor nicotinamide mononucleotide in overweight or obese postmenopausal women with prediabetes (see the Perspective by Hepler and Bass). The treatment improved insulin sensitivity in muscle, although a change in NAD + content was not detected. The treatment also increased the expression of platelet-derived growth factor b. The results support potential therapeutic action of NAD + supplementation in humans, but how various NAD+ precursors are processed in specific tissues remains to be fully explored. Science , abe9985, this issue p. 1224 ; see also abj0764, p. 1147

16 June 2014 in Analytical Chemistry
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HGHarsha Gowda
Harsha Gowda
Julijana IvanisevicJulijana Ivanisevic
Julijana Ivanisevic
Caroline JohnsonCaroline Johnson
Caroline Johnson
MKMichael E. Kurczy
Michael E. Kurczy
HBH. Paul Benton
H. Paul Benton
GSGary Siuzdak
Gary Siuzdak
XCMS Online (xcmsonline.scripps.edu) is a cloud-based informatic platform designed to process and visualize mass-spectrometry-based, untargeted metabolomic data. Initially, the platform was developed for two-group comparisons to match the independent, “control” versus “disease” experimental design. Here, we introduce an enhanced XCMS Online interface that enables users to perform dependent (paired) two-group comparisons, meta-analysis, and multigroup comparisons, with comprehensive statistical output and interactive visualization tools. Newly incorporated statistical tests cover a wide array of univariate analyses. Multigroup comparison allows for the identification of differentially expressed metabolite features across multiple classes of data while higher order meta-analysis facilitates the identification of shared metabolic patterns across multiple two-group comparisons. Given the complexity of these data sets, we have developed an interactive platform where users can monitor the statistical output of univariate (cloud plots) and multivariate (PCA plots) data analysis in real time by adjusting the threshold and range of various parameters. On the interactive cloud plot, metabolite features can be filtered out by their significance level (p-value), fold change, mass-to-charge ratio, retention time, and intensity. The variation pattern of each feature can be visualized on both extracted-ion chromatograms and box plots. The interactive principal component analysis includes scores, loadings, and scree plots that can be adjusted depending on scaling criteria. The utility of XCMS functionalities is demonstrated through the metabolomic analysis of bacterial stress response and the comparison of lymphoblastic leukemia cell lines.

29 January 2019 in eLife
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Journal Article
Open access
CYCong-Hui Yao
Cong-Hui Yao
RWRencheng Wang
Rencheng Wang
YWYahui Wang
Yahui Wang
CKChe-Pei Kung
Che-Pei Kung
JWJason D Weber
Jason D Weber
GPGary J. Patti
Gary J. Patti
Proliferating cells often have increased glucose consumption and lactate excretion relative to the same cells in the quiescent state, a phenomenon known as the Warburg effect. Despite an increase in glycolysis, however, here we show that non-transformed mouse fibroblasts also increase oxidative phosphorylation (OXPHOS) by nearly two-fold and mitochondrial coupling efficiency by ~30% during proliferation. Both increases are supported by mitochondrial fusion. Impairing mitochondrial fusion by knocking down mitofusion-2 (Mfn2) was sufficient to attenuate proliferation, while overexpressing Mfn2 increased proliferation. Interestingly, impairing mitochondrial fusion decreased OXPHOS but did not deplete ATP levels. Instead, inhibition caused cells to transition from excreting aspartate to consuming it. Transforming fibroblasts with the Ras oncogene induced mitochondrial biogenesis, which further elevated OXPHOS. Notably, transformed fibroblasts continued to have elongated mitochondria and their proliferation remained sensitive to inhibition of Mfn2. Our results suggest that cell proliferation requires increased OXPHOS as supported by mitochondrial fusion.