David Jaramillo

Mr. David Jaramillo


Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 April 2021 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
DJDavid Jaramillo
David Jaramillo
HJHenry Z. H. Jiang
Henry Z. H. Jiang
HEHayden A. Evans
Hayden A. Evans
RCRomit Chakraborty
Romit Chakraborty
HFHiroyasu Furukawa
Hiroyasu Furukawa
JLJeffrey R. Long
Jeffrey R. Long

3 February 2020 in Nature Materials
Verified
Journal Article
Closed access
PDF file
DJDavid Jaramillo
David Jaramillo
DRDouglas A. Reed
Douglas A. Reed
HJHenry Z. H. Jiang
Henry Z. H. Jiang
JOJulia Oktawiec
Julia Oktawiec
MMMichael W. Mara
Michael W. Mara
JLJeffrey R. Long
Jeffrey R. Long

11 August 2022 in Chemical Science
Verified
Journal Article
Open access
PDF file
DJDavid Jaramillo
David Jaramillo
AJAdam Jaffe
Adam Jaffe
BSBenjamin E. R. Snyder
Benjamin E. R. Snyder
ASAlex Smith
Alex Smith
ETEric Taw
Eric Taw
JLJeffrey R. Long
Jeffrey R. Long
This Perspective summarizes progress in the development of O 2 -selective metal–organic frameworks for adsorptive air separations and identifies key metrics and design considerations toward optimizing material performance for practical applications.

1 June 2014 in SLAS Discovery
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Journal Article
Open access
PDF file
MWMathias J. Wawer
Mathias J. Wawer
DJDavid Jaramillo
David Jaramillo
VDVlado Dančík
Vlado Dančík
DFDaniel M. Fass
Daniel M. Fass
SHStephen J. Haggarty
Stephen J. Haggarty
PCPaul A. Clemons
Paul A. Clemons
Understanding the structure–activity relationships (SARs) of small molecules is important for developing probes and novel therapeutic agents in chemical biology and drug discovery. Increasingly, multiplexed small-molecule profiling assays allow simultaneous measurement of many biological response parameters for the same compound (e.g., expression levels for many genes or binding constants against many proteins). Although such methods promise to capture SARs with high granularity, few computational methods are available to support SAR analyses of high-dimensional compound activity profiles. Many of these methods are not generally applicable or reduce the activity space to scalar summary statistics before establishing SARs. In this article, we present a versatile computational method that automatically extracts interpretable SAR rules from high-dimensional profiling data. The rules connect chemical structural features of compounds to patterns in their biological activity profiles. We applied our method to data from novel cell-based gene-expression and imaging assays collected on more than 30,000 small molecules. Based on the rules identified for this data set, we prioritized groups of compounds for further study, including a novel set of putative histone deacetylase inhibitors.

12 September 2024 in International Journal of Hydrogen Energy
Verified
Journal Article
Closed access
DJDavid Jaramillo
David Jaramillo
JMJulio Moreno-Blanco
Julio Moreno-Blanco
SASalvador Martin Aceves
Salvador Martin Aceves

14 May 2018 in C
Verified
Journal Article
Open access
PDF file
Maria DulayMaria Dulay
Maria Dulay
NZNaina Zaman
Naina Zaman
DJDavid Jaramillo
David Jaramillo
AMAlison C. Mody
Alison C. Mody
RZRichard Zare
Richard Zare
Early detection of pathogens requires methods that are fast, selective, sensitive and affordable. We report the development of a biosensor with high sensitivity and selectivity based on the low-cost preparation of organosiloxane (OSX) polymers imprinted with E. coli-GFP (green fluorescent protein). OSX polymers with high optical transparency, no cracking, and no shrinkage were prepared by varying several parameters of the sol–gel reaction. The unique shape and chemical fingerprint of the targeted inactivated E. coli-GFP were imprinted into bulk polymers by replication imprinting where the polymer solution was dropcast onto a bacteria template that produced a replica of the bacterial shape and chemistry on the polymer surface upon removal of the template. Capture performances were studied under non-laminar flow conditions with samples containing inactivated E. coli-GFP and compared to inactivated S. typhimurium-GFP. Capture selectivity ratios are dependent on the type of alkoxysilanes used, the H2O:silane molar ratio, and the polymerization temperature. The bacteria concentration in suspension ranged from ~6 × 105 to 1.6 × 109 cells/mL. E. coli-imprinted OSX polymers with polyethylene glycol (PEG) differentiated between the targeted bacterium E. coli, and non-targeted bacteria S. typhimurium and native E. coli-GFP, achieving selectivity ratios up to 4.5 times higher than polydimethylsiloxane (PDMS) and OSX polymers without PEG.