Samuel Beck

Dr. Samuel Beck

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 November 2024 in PNAS Nexus
Verified
Journal Article
Open access
VGVadim N Gladyshev
Vadim N Gladyshev
BABenjamin Anderson
Benjamin Anderson
HBHanna Barlit
Hanna Barlit
BBBenjamin Barré
Benjamin Barré
SBSamuel Beck
Samuel Beck
AZAlex Zhavoronkov
Alex Zhavoronkov
To gain insight into how researchers of aging perceive the process they study, we conducted a survey among experts in the field. While highlighting some common features of aging, the survey exposed broad disagreement on the foundational issues. What is aging? What causes it? When does it begin? What constitutes rejuvenation? Not only was there no consensus on these and other core questions, but none of the questions received a majority opinion—even regarding the need for consensus itself. Despite many researchers believing they understand aging, their understanding diverges considerably. Importantly, as different processes are labeled as “aging” by researchers, different experimental approaches are prioritized. The survey shed light on the need to better define which aging processes this field should target and what its goals are. It also allowed us to categorize contemporary views on aging and rejuvenation, revealing critical, yet largely unanswered, questions that appear disconnected from the current research focus. Finally, we discuss ways to address the disagreement, which we hope will ultimately aid progress in the field.

29 November 2023 in Gut Microbes
Verified
Journal Article
Open access
NCNicholas Alexander Crossland
Nicholas Alexander Crossland
SBSamuel Beck
Samuel Beck
WTWei Yu Tan
Wei Yu Tan
MLMing Lo
Ming Lo
JMJoel Bernard Mason
Joel Bernard Mason
JCJimmy W. Crott
Jimmy W. Crott
Aging is a strong risk factor for colorectal cancer (CRC). It is well established that gut microbial dysbiosis can play a role in the etiology of CRC. Although the composition of the gut microbial community changes with age and is reported to become more pro-inflammatory, it is unclear whether such changes are also pro-tumorigenic for the colon. To address this gap, we conducted fecal microbiota transplants (FMT) from young (DY, ~6 wk) and old (DO, ~72 wk) donor mice into young (8 wk) recipient mice that were pre-treated with antibiotics. After initiating tumorigenesis with azoxymethane, recipients were maintained for 19 wk during which time they received monthly FMT boosters. Compared to recipients of young donors (RY), recipients of old donors (RO) had an approximately 3-fold higher prevalence of histologically confirmed colon tumors (15.8 vs 50%, Chi2 P = .03), approximately 2-fold higher proliferating colonocytes as well as significantly elevated colonic IL-6, IL-1β and Tnf-α. Transcriptomics analysis of the colonic mucosa revealed a striking upregulation of mitochondria-related genes in the RO mice, a finding corroborated by increased mitochondrial abundance. Amongst the differences in fecal microbiome observed between DY and DO mice, the genera Ruminoclostridium, Lachnoclostridium and Marvinbryantia were more abundant in DY mice while the genera Bacteroides and Akkermansia were more abundant in DO mice. Amongst recipients, Ruminoclostridium and Lachnoclostridium were higher in RY mice while Bacteroides was higher in RO mice. Differences in fecal microbiota were observed between young and old mice, some of which persisted upon transplant into recipient mice. Recipients of old donors displayed significantly higher colonic proliferation, inflammation and tumor abundance compared to recipients of young donors. These findings support an etiological role for altered gut microbial communities in the increased risk for CRC with increasing age and establishes that such risk can be transmitted between individuals.

17 December 2021 in Science Advances
Verified
Journal Article
Open access
JLJun-Yeong Lee
Jun-Yeong Lee
IDIan Davis
Ian Davis
EYElliot H. H. Youth
Elliot H. H. Youth
JKJonghwan Kim
Jonghwan Kim
GCGary Churchill
Gary Churchill
SBSamuel Beck
Samuel Beck
Disrupted nuclear architecture triggers misexpression of genes lacking CpG islands and physiological deterioration during aging.

4 July 2024 in Nature Chemical Biology
Verified
Journal Article
Closed access
PDF file
KLKwangwoon Lee
Kwangwoon Lee
MBMarco Barone
Marco Barone
AWAmanda L. Waterbury
Amanda L. Waterbury
HJHanjie Jiang
Hanjie Jiang
ENEunju Nam
Eunju Nam
PCPhilip Cole
Philip Cole

16 January 2024 in Journal of Clinical Investigation
Verified
Journal Article
Open access
PDF file
MWMuzhou Wu
Muzhou Wu
AHAilish Hanly
Ailish Hanly
FGFrederick Gibson
Frederick Gibson
RFRobert Fisher
Robert Fisher
SRSamantha Rogers
Samantha Rogers
RARhoda M. Alani
Rhoda M. Alani
Virtually all patients with BRAF-mutant melanoma develop resistance to MAPK inhibitors largely through nonmutational events. Although the epigenetic landscape is shown to be altered in therapy-resistant melanomas and other cancers, a specific targetable epigenetic mechanism has not been validated. Here, we evaluated the corepressor for element 1–silencing transcription factor (CoREST) epigenetic repressor complex and the recently developed bivalent inhibitor corin within the context of melanoma phenotype plasticity and therapeutic resistance. We found that CoREST was a critical mediator of the major distinct melanoma phenotypes and that corin treatment of melanoma cells led to phenotype reprogramming. Global assessment of transcript and chromatin changes conferred by corin revealed specific effects on histone marks connected to epithelial-mesenchymal transition–associated (EMT-associated) transcription factors and the dual-specificity phosphatases (DUSPs). Remarkably, treatment of BRAF inhibitor–resistant (BRAFi-R) melanomas with corin promoted resensitization to BRAFi therapy. DUSP1 was consistently downregulated in BRAFi-R melanomas, which was reversed by corin treatment and associated with inhibition of p38 MAPK activity and resensitization to BRAFi therapies. Moreover, this activity was recapitulated by the p38 MAPK inhibitor BIRB 796. These findings identify the CoREST repressor complex as a central mediator of melanoma phenotype plasticity and resistance to targeted therapy and suggest that CoREST inhibitors may prove beneficial for patients with BRAFi-resistant melanoma.

1 July 2021 in Vaccine
Verified
Journal Article
Closed access
SOSeo-Ho Oh
Seo-Ho Oh
SKSung-Hee Kim
Sung-Hee Kim
JJJi-Hye Jeon
Ji-Hye Jeon
EKEun Bae Kim
Eun Bae Kim
NLNam-Kyung Lee
Nam-Kyung Lee
SKSang-Kee Kang
Sang-Kee Kang