Andrew Daly

Mr. Andrew Daly


Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
24 January 2019 in Viruses
Verified
Journal Article
Open access
PDF file
MGMark Gibbs
Mark Gibbs
GCGrant Chambers
Grant Chambers
LPLindsay Penrose
Lindsay Penrose
ADAndrew Daly
Andrew Daly
JMJoanne Mackie
Joanne Mackie
FCFiona Constable
Fiona Constable
Pospiviroid species are transmitted through capsicum and tomato seeds. Trade in these seeds represents a route for the viroids to invade new regions, but the magnitude of this hazard has not been adequately investigated. Since 2012, tomato seed lots sent to Australia have been tested for pospiviroids before they are released from border quarantine, and capsicum seed lots have been similarly tested in quarantine since 2013. Altogether, more than 2000 seed lots have been tested. Pospiviroids were detected in more than 10% of the seed lots in the first years of mandatory testing, but the proportion of lots that were infected declined in subsequent years to less than 5%. Six pospiviroid species were detected: Citrus exocortis viroid, Columnea latent viroid, Pepper chat fruit viroid, Potato spindle tuber viroid, Tomato chlorotic dwarf viroid and Tomato apical stunt viroid. They were detected in seed lots exported from 18 countries from every production region. In many seed lots, the detectable fraction (prevalence) of infected seeds was estimated to be very small, as low as 6 × 10−5 (~1 in 16,000; CI 5 × 10−6 to 2.5 × 10−4) for some lots. These findings raise questions about seed production practices, and the study indicates the geographic distributions of these pathogens are uncertain, and there is a continuing threat of invasion.

6 November 2019 in Viruses
Verified
Journal Article
Open access
PDF file
DDDavid Dall
David Dall
LPLindsay Penrose
Lindsay Penrose
ADAndrew Daly
Andrew Daly
FCFiona Constable
Fiona Constable
MGMark Gibbs
Mark Gibbs
Analyses of pospiviroids in commercial seed lots of tomato and capsicum, determined by testing of 12,000 to 40,000 seeds per lot, have enabled the development of empirically-derived distribution curves for the observed prevalences of viroids in those commodities. Those distribution curves can be considered in conjunction with statistically-based estimates of detection that would be achieved using other sample sizes. Statistical calculations using binomial distributions show that sample sizes of 3000 and 9400 seeds allow detection of viroid prevalences as low as 0.1% and 0.032%, respectively, with 95% confidence. Applying those calculations to observed viroid prevalences in contaminated tomato seed lots, it is estimated that the use of sample sizes of 3000 and 9400 seeds would detect 15% and 42%, respectively, of the contaminated seed lots identified using the larger sample sizes of approximately 20,000 seeds reported in this study. It is concluded that the higher costs associated with testing of larger sample sizes represent a worthwhile investment in agricultural biosecurity.

22 December 2022 in Australasian Plant Pathology
Verified
Journal Article
Closed access
PDF file
SPS. Phanthavong
S. Phanthavong
ADAndrew Daly
Andrew Daly
BWB. Weir
B. Weir
DLD. Lee
D. Lee
DPD. Park
D. Park
LBL. Burgess
L. Burgess

1 January 2022 in Journal of Citrus Pathology
Verified
Journal Article
Open access
PDF file
Nerida Jane DonovanNerida Jane Donovan
Nerida Jane Donovan
AEAnna Englezou
Anna Englezou
SPSengphet Phanthavong
Sengphet Phanthavong
GCGrant Chambers
Grant Chambers
HDHang Thi Dao
Hang Thi Dao
LBLester William Burgess
Lester William Burgess
Citrus has been promoted in the Lao People’s Democratic Republic (Lao PDR) as a poverty reduction strategy for at least two decades. However, citrus trees have been in widespread decline for no less than ten years. Since 2010, the authors have observed symptoms on citrus trees consistent with the bacterial disease huanglongbing (HLB). These symptoms included asymmetric leaf mottle, small lopsided fruit, poor fruit production and tree decline. The authors then initiated a long-term study on the occurrence of HLB in southern Lao PDR. Samples of leaf mid-ribs were collected from citrus trees in orchards, nurseries, and backyards across four provinces: Champasak, Sekong, Salavan, and Savannakhet. The presence of ‘ Candidatus Liberibacter asiaticus’, the putative causal agent of the Asiatic form of HLB, was confirmed in 59 of 109 samples collected in all four provinces. The Asian citrus psyllid, the vector of ‘ Ca . L. asiaticus’, was also observed on citrus trees and tested positive for the pathogen. The implications of these findings for citrus production in Lao PDR are discussed.