SHANTWANA GHIMIRE

Dr. SHANTWANA GHIMIRE

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 June 2021 in Physiologia Plantarum
Verified
Journal Article
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XTXun Tang
Xun Tang
SGSHANTWANA GHIMIRE
SHANTWANA GHIMIRE
WLWeigang Liu
Weigang Liu
XFXue Fu
Xue Fu
HZHuanhuan Zhang
Huanhuan Zhang
HSHuaijun Si
Huaijun Si

26 June 2020 in International Journal of Genomics
Verified
Journal Article
Open access
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SGSHANTWANA GHIMIRE
SHANTWANA GHIMIRE
XTXun Tang
Xun Tang
NZNing Zhang
Ning Zhang
WLWeigang Liu
Weigang Liu
XQXuehong Qi
Xuehong Qi
HSHuaijun Si
Huaijun Si
SUMO-conjugating enzymes (SCE) and SUMO (Small Ubiquitin-Like Modifiers) genes are important components of SUMOylation. SCE has a crucial role during the SUMOylation process which acts as a catalyst to transfer SUMO to the target protein. Comprehensive studies on SCE and SUMO have been performed in some plants, but studies on these genes remain limited in potato. This study is aimed at exploring the role of StSCE and StSUMO genes in abiotic stress conditions. Nine and seven putative StSCEs and StSUMO genes, respectively, were identified using different methods and databases available for potato. Chromosomal localization showed that SCE and StSUMO genes are unevenly distributed on 7 different chromosomes. Potato genome database was accessed for the expression profile of StSCE and StSUMO genes, and these genes were differentially expressed in different tissues and organs during different phases of plant growth. The expression patterns on different treatments were further evaluated using qRT-PCR for all the StSCE and StSUMO genes. The expression was upregulated in StSCE1/5/6 and 7 under salt and PEG treatment. StSUMO 1/2 and 4 were upregulated under salt stress whereas StSCE9 and StSUMO2 and 4 were observed downregulated under PEG treatment. The results of this study could be useful to explore the role of StSCE genes in potato improvement.

12 October 2021 in Physiology and Molecular Biology of Plants
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Journal Article
Closed access
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SGSHANTWANA GHIMIRE
SHANTWANA GHIMIRE
XTXun Tang
Xun Tang
WLWeigang Liu
Weigang Liu
XFXue Fu
Xue Fu
HZHuanhuan Zhang
Huanhuan Zhang
HSHuaijun Si
Huaijun Si

26 April 2024 in Functional Plant Biology
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SGSHANTWANA GHIMIRE
SHANTWANA GHIMIRE
MHMahadi Hasan
Mahadi Hasan
Xiang-wen FangXiang-wen Fang
Xiang-wen Fang
Plants regularly encounter various environmental stresses such as salt, drought, cold, heat, heavy metals and pathogens, leading to changes in their proteome. Of these, a post-translational modification, SUMOylation is particularly significant for its extensive involvement in regulating various plant molecular processes to counteract these external stressors. Small ubiquitin-like modifiers (SUMO) protein modification significantly contributes to various plant functions, encompassing growth, development and response to environmental stresses. The SUMO system has a limited number of ligases even in fully sequenced plant genomes but SUMO E3 ligases are pivotal in recognising substrates during the process of SUMOylation. E3 ligases play pivotal roles in numerous biological and developmental processes in plants, including DNA repair, photomorphogenesis, phytohormone signalling and responses to abiotic and biotic stress. A considerable number of targets for E3 ligases are proteins implicated in reactions to abiotic and biotic stressors. This review sheds light on how plants respond to environmental stresses by focusing on recent findings on the role of SUMO E3 ligases, contributing to a better understanding of how plants react at a molecular level to such stressors.

Verified
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孟韦孟 韦
孟 韦
SGSHANTWANA GHIMIRE
SHANTWANA GHIMIRE
ARAnuja Rijal
Anuja Rijal
KWKaitong Wang
Kaitong Wang
HZHuanhuan Zhang
Huanhuan Zhang
XTXun Tang
Xun Tang
The ubiquitin-proteasome system (UPS) is a key protein degradation pathway in eukaryotes, in which E3 ubiquitin ligases mediate protein ubiquitination, directly or indirectly targeting substrate proteins to regulate various biological processes, including plant growth, hormone signaling, immune responses, and adaptation to abiotic stress. In this study, we identified plant U-box protein 51 in Solanum tuberosum (StPUB51) as an E3 ubiquitin ligase through transcriptomic analysis, and used it as a candidate gene for gene-function analysis. Quantitative real-time PCR (qRT-PCR) was used to examine StPUB51 expression across different tissues, and its expression patterns under simulated drought stress induced by polyethylene glycol (PEG 6000) were assessed. Transgenic plants overexpressing StPUB51 and plants with down-regulated StPUB51 expression were generated to evaluate drought tolerance. The activities of key antioxidant enzymes-superoxide dismutase (SOD), catalase (CAT), and peroxidase (POD) as well as malondialdehyde (MDA) content in transgenic plants’ leaves were measured under drought conditions. Protein–protein interactions involving StPUB51 were explored via yeast two-hybrid (Y2H) screening, with interaction verification by bimolecular fluorescence complementation (BiFC). StPUB51 was predominantly expressed in stems, with lower expression observed in tubers, and its expression was significantly upregulated in response to 20% PEG-6000 simulated drought. Subcellular localization assays revealed nuclear localization of the StPUB51 protein. Under drought stress, StPUB51-overexpressing plants exhibited enhanced SOD, POD, and CAT activities and reduced MDA levels, in contrast to plants with suppressed StPUB51 expression. Y2H and BiFC analyses identified two interacting proteins, StSKP2A and StGATA1, which may be functionally linked to StPUB51. Collectively, these findings suggest that StPUB51 plays a positive regulatory role in drought tolerance, enhancing resilience in potato growth and stress adaptation.

28 November 2025 in Physiologia Plantarum
Verified
Journal Article
Closed access
SGSHANTWANA GHIMIRE
SHANTWANA GHIMIRE
XTXun Tang
Xun Tang
RKRaju Kharel
Raju Kharel
HSHuaijun Si
Huaijun Si
JXJianming Xie
Jianming Xie