Yuri S. Velichko

Dr. Yuri S. Velichko

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Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 March 2008 in Science
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Journal Article
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RCRamille M. Capito
Ramille M. Capito
HAHelena Azevedo
Helena Azevedo
YVYuri S. Velichko
Yuri S. Velichko
Alvaro MataAlvaro Mata
Alvaro Mata
SSSamuel I. Stupp
Samuel I. Stupp
We report here the self-assembly of macroscopic sacs and membranes at the interface between two aqueous solutions, one containing a megadalton polymer and the other, small self-assembling molecules bearing opposite charge. The resulting structures have a highly ordered architecture in which nanofiber bundles align and reorient by nearly 90° as the membrane grows. The formation of a diffusion barrier upon contact between the two liquids prevents their chaotic mixing. We hypothesize that growth of the membrane is then driven by a dynamic synergy between osmotic pressure of ions and static self-assembly. These robust, self-sealing macroscopic structures offer opportunities in many areas, including the formation of privileged environments for cells, immune barriers, new biological assays, and self-assembly of ordered thick membranes for diverse applications.

1 February 2008 in The Journal of Physical Chemistry B
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Journal Article
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YVYuri S. Velichko
Yuri S. Velichko
SSSamuel I. Stupp
Samuel I. Stupp
MCMonica Olvera de la Cruz
Monica Olvera de la Cruz

29 January 2010 in Science
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HCHonggang Cui
Honggang Cui
EPE. Thomas Pashuck
E. Thomas Pashuck
YVYuri S. Velichko
Yuri S. Velichko
SWSteven J. Weigand
Steven J. Weigand
ACAndrew G. Cheetham
Andrew G. Cheetham
SSSamuel I. Stupp
Samuel I. Stupp
X-rays to Order: Self-assembly of molecules is often irreversible. Cui et al. (p. 555 , published online 17 December; see the Perspective by Safinya and Li ) examined the ordering of a short peptide sequence (Ala 6 Glu 3 ) terminated with an alkyl chain. Aqueous solutions of this molecule could form hexagonally ordered filaments, but more dilute solutions were disordered. However, prolonged x-ray exposure caused these arrays to become ordered. These arrays were stable for several hours but eventually returned to a disordered state; the addition of salts slowed the ordering processes. It is possible that during the ordering process, X-ray–induced charging affected the repulsive forces that balance tension within the filament.

8 November 2024 in Medical Image Analysis
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Journal Article
Open access
ZZZheyuan Zhang
Zheyuan Zhang
EKElif Keles
Elif Keles
Gorkem DurakGorkem Durak
Gorkem Durak
YTYavuz Taktak
Yavuz Taktak
OSOnkar Susladkar
Onkar Susladkar
UBUlas Bagci
Ulas Bagci
Automated volumetric segmentation of the pancreas on cross-sectional imaging is needed for diagnosis and follow-up of pancreatic diseases. While CT-based pancreatic segmentation is more established, MRI-based segmentation methods are understudied, largely due to a lack of publicly available datasets, benchmarking research efforts, and domain-specific deep learning methods. In this retrospective study, we collected a large dataset (767 scans from 499 participants) of T1-weighted (T1 W) and T2-weighted (T2 W) abdominal MRI series from five centers between March 2004 and November 2022. We also collected CT scans of 1,350 patients from publicly available sources for benchmarking purposes. We introduced a new pancreas segmentation method, called PanSegNet, combining the strengths of nnUNet and a Transformer network with a new linear attention module enabling volumetric computation. We tested PanSegNet's accuracy in cross-modality (a total of 2,117 scans) and cross-center settings with Dice and Hausdorff distance (HD95) evaluation metrics. We used Cohen's kappa statistics for intra and inter-rater agreement evaluation and paired t-tests for volume and Dice comparisons, respectively. For segmentation accuracy, we achieved Dice coefficients of 88.3% (±7.2%, at case level) with CT, 85.0% (±7.9%) with T1 W MRI, and 86.3% (±6.4%) with T2 W MRI. There was a high correlation for pancreas volume prediction with R2 of 0.91, 0.84, and 0.85 for CT, T1 W, and T2 W, respectively. We found moderate inter-observer (0.624 and 0.638 for T1 W and T2 W MRI, respectively) and high intra-observer agreement scores. All MRI data is made available at https://osf.io/kysnj/. Our source code is available at https://github.com/NUBagciLab/PaNSegNet.

11 April 2007 in Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
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Journal Article
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LPLiam C Palmer
Liam C Palmer
YVYuri S. Velichko
Yuri S. Velichko
MCMonica Olvera de la Cruz
Monica Olvera de la Cruz
SSSamuel I. Stupp
Samuel I. Stupp
Small-molecule self-assembly has proven to be a rich field for the controlled synthesis of supramolecular objects with the size scale of polymers and interesting properties. Using several recent examples from our laboratory, we discuss the development of chemical structure codes for supramolecular self-assembly objects with defined shapes. The resulting materials formed by these objects are promising for electronic functions and biological functions for regenerative medicine.

8 May 2012 in Small
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CNChristina J. Newcomb
Christina J. Newcomb
RBRonit Bitton
Ronit Bitton
YVYuri S. Velichko
Yuri S. Velichko
MSMalcolm L. Snead
Malcolm L. Snead
SSSamuel I. Stupp
Samuel I. Stupp