Nathalie Brandenberg

Dr. Nathalie Brandenberg


Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 September 2020 in Nature
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Journal Article
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MNMikhail Nikolaev
Mikhail Nikolaev
OMOlga Mitrofanova
Olga Mitrofanova
NBNicolas Broguiere
Nicolas Broguiere
SGSara Geraldo
Sara Geraldo
DDDevanjali Dutta
Devanjali Dutta
MLMatthias Lutolf
Matthias Lutolf

7 January 2022 in Science
Verified
Journal Article
Closed access
NGN. Gjorevski
N. Gjorevski
MNM. Nikolaev
M. Nikolaev
TBT. E. Brown
T. E. Brown
OMO. Mitrofanova
O. Mitrofanova
NBNathalie Brandenberg
Nathalie Brandenberg
MLMatthias Lutolf
Matthias Lutolf
Spatial and temporal organoid control: Stem cell–derived organoids form through self-organization and serve as models for organ development, function, and disease, with potential applications in drug development and personalized medicine. However, in the absence of external guidance, developmental processes are stochastic, resulting in variable end products that differ significantly from the native organ. Gjorevski et al . developed approaches for specifying the initial organoid geometry to build intestinal organoids of defined shape, size, and cell distributions, forming structures that are predictable, more similar to normal organs, and reproducible (see the Perspective by Huycke and Gartner). These methods identify symmetry-breaking mechanisms in intestinal morphogenesis and have potential for standardizing organoid-based therapies and facilitating the refinement of mechanistic studies. —BAP

30 June 2017 in Science
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Journal Article
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MZMarcin Zagorski
Marcin Zagorski
YTYoji Tabata
Yoji Tabata
NBNathalie Brandenberg
Nathalie Brandenberg
MLMatthias Lutolf
Matthias Lutolf
GTGašper Tkačik
Gašper Tkačik
AKAnna Kicheva
Anna Kicheva
Building the neural tube: The development of the neural tube is regulated by a pair of morphogens acting in opposing gradients. The mature neural tube is built from a variety of different cell types organized in a consistent dorsal-ventral pattern. Zagorski et al. asked how this pattern is defined in a reproducible way from individual to individual. The morphogens define positions most accurately toward the top of their respective gradients, but things get a bit messy in the middle. Modeling the gene regulatory network's response as a maximum likelihood estimation from the combined input of both morphogens, however, succeeds at defining even the intermediate positions. Thus, the computation of position by the gene regulatory network establishes accurate tissue patterning despite messy inputs. Science , this issue p. 1379

2 October 2024 in Current Research in Toxicology
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Journal Article
Open access
EHElisa Heinzelmann
Elisa Heinzelmann
FPFrancesco Piraino
Francesco Piraino
MCMariana Costa
Mariana Costa
ARAline Roch
Aline Roch
MNMaxim Norkin
Maxim Norkin
NBNathalie Brandenberg
Nathalie Brandenberg
• Organoids mimic in vivo human organs, surpassing 2D cultures in complexity. • Pluripotent Stem Cell (PSC)-derived organoids can model developmental stages. • Patient-derived organoids (PDOs) reflect patient-specific disease states. • Organoids aid in drug discovery, improving efficacy and toxicity studies. • Future work focuses on scalable and biomimetic methods.

24 June 2020 in Scientific Reports
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Journal Article
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SDS. Decembrini
S. Decembrini
SHS. Hoehnel
S. Hoehnel
NBNathalie Brandenberg
Nathalie Brandenberg
Yvan ArsenijevicYvan Arsenijevic
Yvan Arsenijevic
MLMatthias Lutolf
Matthias Lutolf
The development of improved methods to culture retinal organoids is relevant for the investigation of mechanisms of retinal development under pathophysiological conditions, for screening of neuroprotective compounds, and for providing a cellular source for clinical transplantation. We report a tissue-engineering approach to accelerate and standardize the production of retinal organoids by culturing mouse embryonic stem cells (mESC) in optimal physico-chemical microenvironments. Arrayed round-bottom milliwells composed of biomimetic hydrogels, combined with an optimized medium formulation, promoted the rapid generation of retina-like tissue from mESC aggregates in a highly efficient and stereotypical manner: ∼93% of the aggregates contained retinal organoid structures. 26 day-old retinal organoids were composed of ∼80% of photoreceptors, of which ∼22% are GNAT2-positive cones, an important and rare sensory cell type that is difficult to study in rodent models. The compartmentalization of retinal organoids into predefined locations on a two-dimensional array not only allowed us to derive almost all aggregates into retinal organoids, but also to reliably capture the dynamics of individual organoids, an advantageous requirement for high-throughput experimentation. Our improved retinal organoid culture system should be useful for applications that require scalability and single-organoid traceability.

26 August 2021 in Nature Communications
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MGMehmet U. Girgin
Mehmet U. Girgin
NBNicolas Broguiere
Nicolas Broguiere
SHSylke Hoehnel
Sylke Hoehnel
NBNathalie Brandenberg
Nathalie Brandenberg
BMBastien Mercier
Bastien Mercier
MLMatthias Lutolf
Matthias Lutolf
The difficulty of studying post-implantation development in mammals has sparked a flurry of activity to develop in vitro models, termed embryoids, based on self-organizing pluripotent stem cells. Previous approaches to derive embryoids either lack the physiological morphology and signaling interactions, or are unconducive to model post-gastrulation development. Here, we report a bioengineering-inspired approach aimed at addressing this gap. We employ a high-throughput cell aggregation approach to simultaneously coax mouse embryonic stem cells into hundreds of uniform epiblast-like aggregates in a solid matrix-free manner. When co-cultured with mouse trophoblast stem cell aggregates, the resulting hybrid structures initiate gastrulation-like events and undergo axial morphogenesis to yield structures, termed EpiTS embryoids, with a pronounced anterior development, including brain-like regions. We identify the presence of an epithelium in EPI aggregates as the major determinant for the axial morphogenesis and anterior development seen in EpiTS embryoids. Our results demonstrate the potential of EpiTS embryoids to study peri-gastrulation development in vitro.