Jose Niz

Jose Niz


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 2018 in Plant Disease
Verified
Journal Article
Open access
BPB. A. Pérez
B. A. Pérez
JNJose Niz
Jose Niz
RSRicardo Salvador
Ricardo Salvador
MBMarcelo Facundo Berretta
Marcelo Facundo Berretta
MRM. E. M. Roca
M. E. M. Roca
MOM. L. Otero
M. L. Otero
Olive is an economically important crop in Northwestern Argentina where dead branches are frequently observed. In September of 2015 a total of 20 cankered branches and/or wood necrosis from 10 orchards showing dieback symptoms were collected from ´Manzanilla´ olive trees in Catamarca (C) and La Rioja (LR) provinces. One cankered branch from each province was selected to study the dark brown internal tissue under the bark. Small pieces of symptomatic tissue were disinfected with 70% ethanol and 2% sodium hypochlorite, rinsed with sterile distilled water, aseptically transferred to 2% water agar (WA) plates, and incubated at 25°C under 12h light-cycle period until fungal colonies developed. Pure culture of the fungus was obtained through successive transfers of hyphal tips from the margin of growing colony onto WA plates, then hyphal tips were transferred to 9-cm oatmeal agar (OA) plates to study morphological characteristics of the colony. Fungal colonies were fast-growing and covered the plate surface after 4 days at 30°C in darkness. Colonies were dark blue to black, with abundant fluffy aerial mycelium and black underside. Grouped erumpent black pycnidia were observed after 15 days and measured 3 to 5 mm tall with conidia extruding in black masses. Conidigenous cells were short and hyaline. Conidia were unicellular, hyaline, subovoid to ellipsoid, thick-walled with truncate base, and 25.94 (21-30) µm x 14.61 (12-15) µm (n=40). Mature conidia were dark-walled, septate, with longitudinal striations, and 24.59 (22-32) µm x 13.88 (12-16) µm, and 22.54 (20-25) µm x 13.77 (13-15) µm (n=40), with L/W ratio 1.77 and 1.64 for C and LR strains, respectively. Teleomorph was not observed in nature. Morphological traits agreed with descriptions of species within the Lasiodiplodia genus (Punithalingam 1976). To identify the isolates to species, the internal transcribed spacer ITS1-5.8S-ITS2 gene, and part of the translation elongation factor (TEF1-α) and β-tubulin genes were amplified and sequenced using primers ITS1/ITS4, TEF1-α-688F/TEF1-α-986R, and Bet2a/Bet2b (Alves et al 2008). ITS region (KY053847, KX816956), TEF gene (MF422024) and BET gene (MF628107) showed 100%, 90%, and 100% identity with L. theobromae isolates from ‘Mission’ and ‘Sevillano’ (JX515716, JX515717), and “Sevillano” (JX515763, JX515685) olives from California, respectively (Úrbez-Torres et al 2013). DNA sequences were deposited in GenBank. Two fungal isolates, one for each province, were used for pathogenicity tests. Isolates C and LR were grown on OA and incubated at 25°C under 12 h light for 7 days. Pathogenicity was verified on 10 healthy young ´Arbequina´ olive plants. Three small wounds were made on the stem of each plant with a sterile needle. Mycelial plugs were placed on the wounded surface, covered with wet cotton, and kept under 100% RH until symptom development. Non-colonized plugs were used as negative controls. Dark brown lesions were observed extending from the inoculation site reaching 3 cm after 30 days. Control plants showed no symptoms. Re-isolation of the fungus from diseased parts showed the same morphological traits than the fungus isolated from the field. This fungus was previously described on olive trees in Italy(Carlucci et al 2013), and California (Úrbez-Torres et al 2013). This is the first report of L. theobromae on olive in Argentina. References: Alves, A. et al. Fungal Diversity 28:1, 2008. Carlucci, A. et al. Phytopathol. Medit. 52:517, 2013. Punithalingam, E. CMI N° 519. Kew. Surrey. England, 1976. Úrbez-Torres, J. R. et al. Plant Disease 97:231, 2013.

28 February 2024 in Data
Verified
Journal Article
Open access
PDF file
Leopoldo PalmaLeopoldo Palma
Leopoldo Palma
LOLeila Ortiz
Leila Ortiz
JNJose Niz
Jose Niz
MBMarcelo Facundo Berretta
Marcelo Facundo Berretta
Diego SaukaDiego Sauka
Diego Sauka
The genome of Bacillus thuringiensis strain INTA 103-23 was sequenced, revealing a high-quality draft assembly comprising 243 contigs with a total size of 6.30 Mb and a completeness of 99%. Phylogenetic analysis classified INTA 103-23 within the Bacillus cereus sensu stricto cluster. Genome annotation identified 6993 genes, including 2476 hypothetical proteins. Screening for pesticidal proteins unveiled 10 coding sequences with significant similarity to known pesticidal proteins, showcasing a potential efficacy against various insect orders. AntiSMASH analysis predicted 13 biosynthetic gene clusters (BGCs), including clusters with 100% similarity to petrobactin and anabaenopeptin NZ857/nostamide A. Notably, fengycin exhibited a 40% similarity within the identified clusters. Further exploration involved a comparative genomic analysis with ten phylogenetically closest genomes. The ANI values, calculated using fastANI, confirmed the closest relationships with strains classified under Bacillus cereus sensu stricto. This comprehensive genomic analysis of B. thuringiensis INTA 103-23 provides valuable insights into its genetic makeup, potential pesticidal activity, and biosynthetic capabilities. The identified BGCs and pesticidal proteins contribute to our understanding of the strain’s biocontrol potential against diverse agricultural pests.