Niclas Karlsson

Dr. Niclas Karlsson


Research Focus & Metrics

Academic Career Length

33Years (1994-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 March 2008 in Mucosal Immunology
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Journal Article
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SLS K Linden
S K Linden
PSPhil Sutton
Phil Sutton
NKNiclas Karlsson
Niclas Karlsson
Victoria KorolikVictoria Korolik
Victoria Korolik
MMMichael McGuckin
Michael McGuckin
The mucosal tissues of the gastrointestinal, respiratory, reproductive, and urinary tracts, and the surface of the eye present an enormous surface area to the exterior environment. All of these tissues are covered with resident microbial flora, which vary considerably in composition and complexity. Mucosal tissues represent the site of infection or route of access for the majority of viruses, bacteria, yeast, protozoa, and multicellular parasites that cause human disease. Mucin glycoproteins are secreted in large quantities by mucosal epithelia, and cell surface mucins are a prominent feature of the apical glycocalyx of all mucosal epithelia. In this review, we highlight the central role played by mucins in accommodating the resident commensal flora and limiting infectious disease, interplay between underlying innate and adaptive immunity and mucins, and the strategies used by successful mucosal pathogens to subvert or avoid the mucin barrier, with a particular focus on bacteria.

7 June 2012 in Nature Protocols
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Journal Article
Closed access
PJPia H Jensen
Pia H Jensen
NKNiclas Karlsson
Niclas Karlsson
DKDaniel Kolarich
Daniel Kolarich
NPNicolle H. Packer
Nicolle H. Packer

12 January 2007 in Glycobiology
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YWYoshinao Wada
Yoshinao Wada
PAParastoo Azadi
Parastoo Azadi
CCCatherine E Costello
Catherine E Costello
ADAnne Dell
Anne Dell
RDRaymond A. Dwek
Raymond A. Dwek
NTNaoyuki Taniguchi
Naoyuki Taniguchi
Mass spectrometry (MS) of glycoproteins is an emerging field in proteomics, poised to meet the technical demand for elucidation of the structural complexity and functions of the oligosaccharide components of molecules. Considering the divergence of the mass spectrometric methods employed for oligosaccharide analysis in recent publications, it is necessary to establish technical standards and demonstrate capabilities. In the present study of the Human Proteome Organisation (HUPO) Human Disease Glycomics/Proteome Initiative (HGPI), the same samples of transferrin and immunoglobulin-G were analyzed for N-linked oligosaccharides and their relative abundances in 20 laboratories, and the chromatographic and mass spectrometric analysis results were evaluated. In general, matrix-assisted laser desorption/ionization (MALDI) time-of-flight MS of permethylated oligosaccharide mixtures carried out in six laboratories yielded good quantitation, and the results can be correlated to those of chromatography of reductive amination derivatives. For underivatized oligosaccharide alditols, graphitized carbon-liquid chromatography (LC)/electrospray ionization (ESI) MS detecting deprotonated molecules in the negative ion mode provided acceptable quantitation. The variance of the results among these three methods was small. Detailed analyses of tryptic glycopeptides employing either nano LC/ESI MS/MS or MALDI MS demonstrated excellent capability to determine site-specific or subclass-specific glycan profiles in these samples. Taking into account the variety of MS technologies and options for distinct protocols used in this study, the results of this multi-institutional study indicate that MS-based analysis appears as the efficient method for identification and quantitation of oligosaccharides in glycomic studies and endorse the power of MS for glycopeptide characterization with high sensitivity in proteomic programs.

17 February 2020 in Nature Medicine
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HNHiroko Nagao-Kitamoto
Hiroko Nagao-Kitamoto
JLJhansi L. Leslie
Jhansi L. Leslie
SKSho Kitamoto
Sho Kitamoto
Chunsheng JinChunsheng Jin
Chunsheng Jin
KTKristina A. Thomsson
Kristina A. Thomsson
NKNobuhiko Kamada
Nobuhiko Kamada

1 April 2023 in Nature Communications
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BSBashar Shuoker
Bashar Shuoker
MPMichael J. Pichler
Michael J. Pichler
Chunsheng JinChunsheng Jin
Chunsheng Jin
HSHiroka Sakanaka
Hiroka Sakanaka
HWHaiyang Wu
Haiyang Wu
MHMaher Abou Hachem
Maher Abou Hachem
The mucolytic human gut microbiota specialist Akkermansia muciniphila is proposed to boost mucin-secretion by the host, thereby being a key player in mucus turnover. Mucin glycan utilization requires the removal of protective caps, notably fucose and sialic acid, but the enzymatic details of this process remain largely unknown. Here, we describe the specificities of ten A. muciniphila glycoside hydrolases, which collectively remove all known sialyl and fucosyl mucin caps including those on double-sulfated epitopes. Structural analyses revealed an unprecedented fucosidase modular arrangement and explained the sialyl T-antigen specificity of a sialidase of a previously unknown family. Cell-attached sialidases and fucosidases displayed mucin-binding and their inhibition abolished growth of A. muciniphila on mucin. Remarkably, neither the sialic acid nor fucose contributed to A. muciniphila growth, but instead promoted butyrate production by co-cultured Clostridia. This study brings unprecedented mechanistic insight into the initiation of mucin O-glycan degradation by A. muciniphila and nutrient sharing between mucus-associated bacteria.

6 October 2021 in Nature
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ALAna S Luis
Ana S Luis
Chunsheng JinChunsheng Jin
Chunsheng Jin
GPGabriel Vasconcelos Pereira
Gabriel Vasconcelos Pereira
RGRobert W. P. Glowacki
Robert W. P. Glowacki
SGSadie R. Gugel
Sadie R. Gugel
EMEric C. Martens
Eric C. Martens