Background: Soil microorganisms play a key role in nutrient cycling, carbon sequestration, and other important ecosystem processes, yet their response to seasonal dry–wet alternation remains poorly understood. Here, we collected 120 soil samples from dry-hot valleys (DHVs, ~ 1100 m a.s.l.), transition (~ 2000 m a.s.l.) and alpine zones (~ 3000 m a.s.l.) along the Jinsha River in southwest China during both wet and dry seasons. Our aims were to investigate the bacterial microbiome across these zones, with a specific focus on the difference between wet and dry seasons. Results: Despite seasonal variations, bacterial communities in DHVs exhibit resilience, maintaining consistent community richness, diversity, and coverage. This suggests that the microbes inhabiting DHVs have evolved adaptive mechanisms to withstand the extreme dry and hot conditions. In addition, we observed season-specific microbial clades in all sampling areas, highlighting their resilience to environmental fluctuations. Notably, we found similarities in microbial clades between soils from DHVs and the transition zones, including the phyla Actinomycetota, Chloroflexota, and Pseudomonadota. The neutral community model respectively explained a substantial proportion of the community variation in DHVs (87.7%), transition (81.4%) and alpine zones (81%), indicating that those were predominantly driven by stochastic processes. Our results showed that migration rates were higher in the dry season than in the wet season in both DHVs and the alpine zones, suggesting fewer diffusion constraints. However, this trend was reversed in the transition zones. Conclusions: Our findings contribute to a better understanding of how the soil microbiome responds to seasonal dry–wet alternation in the Jinsha River valley. These insights can be valuable for optimizing soil health and enhancing ecosystem resilience, particularly in dry-hot valleys, in the context of climate change.

Comprehensive genomic analyses of cancers have revealed substantial intrapatient molecular heterogeneities that may explain some instances of drug resistance and treatment failures. Examination of the clonal composition of an individual tumor and its evolution through disease progression and treatment may enable identification of precise therapeutic targets for drug design. Multi-region and single-cell sequencing are powerful tools that can be used to capture intratumor heterogeneity. Here, we present a database we’ve named CancerTracer (http://cailab.labshare.cn/cancertracer): a manually curated database designed to track and characterize the evolutionary trajectories of tumor growth in individual patients. We collected over 6000 tumor samples from 1548 patients corresponding to 45 different types of cancer. Patient-specific tumor phylogenetic trees were constructed based on somatic mutations or copy number alterations identified in multiple biopsies. Using the structured heterogeneity data, researchers can identify common driver events shared by all tumor regions, and the heterogeneous somatic events present in different regions of a tumor of interest. The database can also be used to investigate the phylogenetic relationships between primary and metastatic tumors. It is our hope that CancerTracer will significantly improve our understanding of the evolutionary histories of tumors, and may facilitate the identification of predictive biomarkers for personalized cancer therapies.

Forest thinning and ground cover plant management play crucial roles in habitat enhancement, yet their effects on soil microbiota remain poorly understood. This study examines their impact on soil properties and bacterial communities in artificial spruce forests (Picea asperata) within China’s Huangtuliang ecological corridor, a crucial habitat for giant pandas. Thinning significantly alters soil pH and total phosphorus (TP) levels, with minimal changes observed in total nitrogen (TN), microbial biomass carbon (MBC), and nitrogen (MBN). The combined effect of thinning and ground cover presence increases soil organic carbon (SOC) to 65.47 g/kg, contrasting with its absence. Thinning enhances the abundance of Proteobacteria, Acidobacteria, and Chloroflexi, while reducing Actinobacteria. Conversely, ground cover removal decreases Proteobacteria and Bacteroidetes but increases Chloroflexi, Verrucomicrobia, and Rokubacteria. These changes lead to reduced bacterial community diversity, as indicated by a lower Shannon diversity index and distinct community composition differences demonstrated through beta diversity analysis. Soil pH, TP, and MBN are crucial in maintaining bacterial community structure, with pH and TP exhibiting the strongest correlations. Network analysis confirms the significant influence of TP and pH on bacterial genera across various phyla. This study reveals the role of stochastic processes in high-elevation, low-temperature ecological corridors (R² = 0.817), with thinning’s impact varying depending on ground cover presence, thus enhancing effects post-removal by reducing dispersal limitation (migration rate, m = 0.96). These findings highlight the ecological implications of habitat management in sensitive ecosystems and advance our understanding of microbial dynamics in critical habitats.

Climate change has led to an increasing frequency of droughts, potentially undermining soil stability. In such a changing environment, the shallow reinforcement effect of plant roots often fails to meet expectations. This study aims to explore whether this is associated with the alteration of plant traits as a response to environmental change. Focusing on Amorpha fruticosa, a species known for its robust root system that plays a crucial role in soil consolidation and slope stabilization, thereby reducing soil and water erosion, we simulated a drought-rewetting event to assess the legacy effects of drought on the soil shear strength and the mechanical and hydrological traits associated with the reinforcement provided by A. fruticosa. The results show that the legacy effect of drought significantly diminishes the soil shear strength. Pretreated with drought, plant roots undergo morphological alterations such as deeper growth, yet the underground root biomass and diameter decline, thereby influencing mechanical reinforcement. Chemical composition analysis indicates that the plant’s adaptation to drought modifies the intrinsic properties of the roots, with varying impacts on different root types and overall reinforcement. Concurrently, the stomatal conductance and transpiration rate of leaves decrease, weakening the capacity to augment soil matric suction through transpiration and potentially reducing hydrological reinforcement. Although rewetting treatments aid in recovery, drought legacy effects persist and impact plant functional attributes. This study emphasizes that, beyond soil matric suction, plant adaptive mechanisms in response to environmental changes may also contribute significantly to reduced soil shear strength. Consequently, ecological restoration strategies should consider plant trait adaptations to drought, enhancing root systems for soil conservation and climate resilience.