Birds are natural hosts for numerous zoonotic viral pathogens, including West Nile virus, which is transmitted by mosquitoes. During migration, birds can act as vectors for the geographic spread of viruses. WNV is endemic in Portugal, causing annual outbreaks, particularly in horses. Here, we report the first detection of an avian WNV strain isolated from a wild bird (Astur gentilis) collected in Portugal in mid-September 2024. Phylogenetic and phylogeographic analyses were conducted to trace the virus’s origin and potential transmission routes, integrating the obtained full-length genomic sequence with a dataset of WNV strains from Africa and Europe (1951–2024). Phylogenetic analysis of 92 WNV sequences spanning lineages 1–5 positioned the 2024 isolate within lineage 1a. Results obtained using phylodynamics-based analysis showed that this isolate likely originated in Africa and reached Portugal via Spain’s Cádiz coast, confirming previously described WNV dispersal patterns between Africa and Europe. The data suggest a migratory route from West Africa to Europe, extending through countries such as Senegal, Mauritania, Morocco, Portugal, Spain, Italy, and France, indicating a reciprocal flow of the virus back into Africa. These transmission routes match the migratory paths of Afro-Palearctic bird species, emphasizing the role of migratory birds in the long-distance spread of WNV.

The first official case of bluetongue virus serotype 3 (BTV-3) in Portugal was confirmed in sheep from the district of Évora in September 2024. Notably, mortality was observed in pregnant sheepdogs within the affected sheep flocks. This study presents four cases of pregnant dogs infected with BTV-3 in mid-September 2024, all of which aborted prior to death. BTV-3 was identified by RT-qPCR following initial positive results from pan-BTV RT-qPCR. The virus was subsequently isolated from the blood of one of the dogs in BHK-21 cells, and a partial sequence of the vp2 gene was obtained. This sequence showed 100% similarity to sheep BTV3/3234/PT2024, identified in Portugal in September 2024, as well as to BTV-3/NET2023, first reported in the Netherlands in 2023. These findings suggest that the viruses may be related or share a common origin. Co-infection with common canine viruses and pathogenic bacteria was ruled out, confirming that the fatalities were due to BTV-3 infection, probably by ingestion of sheep placenta after lambing. Our results confirm the potential for the transmission of BTV-3 to non-ruminant species, particularly carnivores, and, therefore, the wider ecological implications of this virus. In addition, the identification of transplacental transmission of BTV-3 in one of the dogs provides new evidence highlighting the complexity of the virus’ transmission mechanisms.