This paper introduces a novel algorithm for the efficient verification of a Petri net-based concurrent control system. The proposed method is based on the computation of transition invariant coverage to detect possible errors in the modelled system. Transition invariants play a crucial role in ensuring the correctness and reliability of such systems; however, existing methods often struggle with high computational demand, especially in the case of large and complex systems. The proposed approach addresses this challenge by performing a fast polynomial-time analysis to identify uncovered transitions, thereby streamlining the verification process. The effectiveness and efficiency of the proposed technique is verified experimentally with a set of 386 test modules (benchmarks) and compared against two well-known established methods: the classical method proposed by Martínez–Silva (as a reference algorithm) and PIPE (Platform Independent Petri Net Editor) tool. The results of the experiments confirm high performance of the presented algorithm, which was able to compute results for all the tested cases. In contrast, both the reference algorithm as well as the PIPE tool failed to deliver results for all examined models within one hour. The proposed algorithm is especially useful in early design stages, offering system designers timely insights into potential issues.