Nikolay Ilyinsky

Dr. Nikolay Ilyinsky


Research Focus & Metrics

Academic Career Length

3Years (2024-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 July 2026 in BioTech
Verified
Journal Article
Open access
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ESEkaterina Sergeevna Scheglova
Ekaterina Sergeevna Scheglova
SNSabina Nebieva
Sabina Nebieva
KMKamilla Vitalievna Mekhantseva
Kamilla Vitalievna Mekhantseva
SBSiarhei Bukhalovich
Siarhei Bukhalovich
AKAnna Kudryavtseva
Anna Kudryavtseva
IMIlya Vladimirovich Manukhov
Ilya Vladimirovich Manukhov
A previous study demonstrated that quorum sensing (QS) genes from the psychrophilic bacterium Aliivibrio logei can be used in Escherichia coli to obtain bacterial cultures with controlled amounts of a target protein. However, the QS system may be induced non-uniformly across the cell population. In this study, we used an expression vector containing luxR/luxI regulatory genes from A. logei carrying sfGFP as a reporter gene. Reporter expression was regulated by the autoinducer 3OxoC6-HSL, activated at 22 °C, and terminated at 37 °C. Flow cytometry was used to assess the GFP fluorescence distribution at the single-cell level. The system provided dose-dependent unimodal expression lacking formation of distinct ON/OFF subpopulations, while the robust coefficient of variation decreased with increasing autoinducer concentration. The autoinducer synthase LuxI enabled autoinduction, but under the tested conditions, no substantial effect on expression homogeneity was detected. Raising the temperature to 37 °C effectively halted expression, allowing intermediate target protein values to be fixed at the single-cell level. Overall, the developed system represents a promising tool for biotechnological applications requiring precise and uniform control of expression.

10 December 2024 in Preprints.org
Verified
Preprint
Open access
PDF file
SNSofia Nazarova
Sofia Nazarova
VAVadim Alekhin
Vadim Alekhin
VPVladislav Pavlov
Vladislav Pavlov
YSYury Semenov
Yury Semenov
SBSiarhei Bukhalovich
Siarhei Bukhalovich
NINikolay Ilyinsky
Nikolay Ilyinsky
Lysosomes are important organelles of eukaryotic cells required for autophagy, endocytosis, protection against pathogens, maintenance of metabolic balance and cell signaling. A model of ion homeostasis and synchronised, interdependent operation of ion transporters in the lysosome allows one to predict the response to external influences and to design and interpret experiments correctly. Especially, with the advent of organelle rhodopsin optogenetics, there is a great need to predict cellular outcomes after light-driven specific ion transport in lysosomes and other organelles. At present, there are no models of lysosomal ion balance that fully match the current experimental data and allow simulation the organelle’s response to stress. Here we present an interactive model that provides near-lysosomal ion concentrations and adequate stress responses. The model is stable to lysosome maturation, transient organelle swelling, membrane permeabilization, deacidification by vATPase inhibition or additional proton efflux, accumulation of weakly basic, “proton sponge”-like cationic amphiphilic drug (CAD) in the lysosome. The model shows that at least one of the functions of lysosomal calcium could be attributed to the stress signal of organelle deacidification. As a major advance, our simulation provides the possibility to have the lysosome under mixed stress conditions. In addition to suggesting the dynamics of the stress response, the model also allows to study of purely selective effects, which can be experimentally induced using optogenetics. Understanding the mechanisms of stable, stress-resistant functioning of the lysosome provides ideas for the invention of anti-disease and anti-aging interventions.