The increasing development of industries, resulting in a large volume of mining, smelting, and combustion wastes, and intense agricultural activities, due to demand for food and energy, have caused environmental hazards for food quality and ecosystems. This is a review on the contamination of the soil–groundwater–crop system and a potential reduction of the contamination by a gradual shift towards green economy within the European Union and on a worldwide scale. Available mineralogical and geochemical features from contaminated Neogene basins have shown a diversity in the contamination sources for soil and groundwater, and highlighted the need to define the contamination sources, hot spots, degree/extent of contamination, and provide ways to restrict the transfer of heavy metals/metalloids into the food chain, without the reduction of the agricultural and industrial production. Among harmful elements for human health and ecosystems, the contamination of groundwater (thousands of μg/L Cr(VI)) by industrial activities in many European countries is of particular attention. Although Cr(VI) can be reduced to Cr(III) and be completely attenuated in nature under appropriate pH and Eh conditions, the contamination by Cr(VI) of coastal groundwater affected by the intrusion of seawater often remains at the hundreds μg/L level. A positive trend between B and Cr(VI) may provide insights on the role of the borate [B(OH)₄]⁻ ions, a potential buffer, on the stability of Cr(VI) in coastal groundwater. Efforts are needed towards reducing toxic metal(loids) from the industrial wastewaters prior to their discharge into receptors, as well as the transformation of hazardous mining/industrial wastes to new products and applications to the optimization of agricultural management strategies.

Porphyry Cu–Au–Pd±Pt deposits are significant Au resources, but their Pd and Pt potential is still unknown. Elevated Pd, Pt (hundreds of ppb) and Au contents are associated with typical stockwork magnetite-bornite-chalcopyrite assemblages, at the central parts of certain porphyry deposits. Unexpected high grade Cu–(Pd+Pt) (up to 6 ppm) mineralization with high Pd/Pt ratios at the Elatsite porphyry deposit, which is found in a spatial association with the Chelopech epithermal deposit (Bulgaria) and the Skouries porphyry deposit, may have formed during late stages of an evolved hydrothermal system. Estimated Pd, Pt and Au potential for porphyry deposits is consistent with literature model calculations demonstrating the capacity of aqueous vapor and brine to scavenge sufficient quantities of Pt and Pd, and could contribute to the global platinum-group element (PGE) production. Critical requirements controlling potential of porphyry deposits may be from the metals contained in magma (metasomatized asthenospheric mantle wedge as indicated by significant Cr, Co, Ni and Re contents). The Cr content may be an indicator for the mantle input.

The investigation of the contamination in soil, plants and groundwater revealed a spatial evolution, with an increasing trend in the Cr, Fe, Ni, Mn and Co contents in soils from the Assopos to Thiva basin, followed by C. Evia and Ni-laterite deposits, suggesting that the latter and their parent ophiolites are a potential source for these metals. In contrast, the contamination in groundwater by Cr(VI), ranging from 2 to 360 μg/L Cr, and a varying degree of salinization is probably due to both human activities and natural processes. A diverse source for the contamination of soil and groundwater in the Assopos-Thiva basins is consistent with the increasing trend of the Mg/Si ratio and Cr(VI) concentration in water. The use of deep karst-type aquifer instead of the shallow-Neogene one may provide a solution to the crucial environmental problem. The selective extraction by EDTA and alkaline solution showed that Cr and Fe are less available than Mn. The Cr contents in plants range from <1 to tens of mg/kg, due probably to the high resistance of chromite. However, the average Cr_total contents in plants/crops are higher than normal or sufficient values, whilst Cr_total accumulation [(% metals in plants × 100)/metal in soil] and Cr(VI) accumulation are relatively low. There is a very good positive correlation between accumulation factors for Cr and Fe (R² = 0.92), suggesting a similarity concerning their uptake.

Chromium concentrations in seawater are less than 0.5 μg/L, but the Cr(VI) in contaminated coastal groundwater affected by Cr-bearing rocks/ores and/or human activities, coupled with the intrusion of seawater may reach values of hundreds of μg/L. A potential explanation for the stability of the harmful Cr(VI) in contaminated coastal aquifers is still unexplored. The present study is an overview of new and literature data on the composition of coastal groundwater and seawater, aiming to provide potential relationships between Cr(VI) with major components in seawater and explain the elevated Cr(VI) concentrations. It is known that the oxidation of Cr(III) to Cr(VI) and the subsequent back-reduction of Cr(VI) processes, during the transport of the mobilized Cr(VI) in various aquifers, facilitate the natural attenuation process of Cr(VI). Moreover, the presented positive trend between B and Cr(VI) and negative trend between δ⁵³Cr values and B concentration may suggest that seawater components significantly inhibit the Cr(VI) reduction into Cr(III), and provide insights on the role of the borate, [B(OH)₄]⁻ ions, a potential buffer, on the stability of Cr(VI) in coastal groundwater. Therefore, efforts are needed toward the prevention and/or minimization of the contamination by Cr(VI) of in coastal aquifers, which are influenced by the intrusion of seawater and are threatened by changes in sea level, due to climate change. The knowledge of the contamination sources, hotspots and monitoring of water salinization processes (geochemical mapping) for every coastal country may contribute to the optimization of agricultural management strategies.

A detailed geochemical study and a thorough mineralogical description of the rare-earth elements (REE)-minerals and associated minerals were carried out in two vertical profiles of approximately 4 m length, from the Nissi (Patitira) bauxite laterite deposit, Lokris, Greece, characterized by the presence of goethite in small sizes resembling bacterial cell coated by goethite and a significant REE enrichment. The enrichment of the REE concentrated in bastnaesite-group minerals, the intergrowths between REE-minerals and Al–Ni–silicates with significant sulfur contents and their association with goethite microtextures interpreted as bacteriomorphic, indicate REE remobilization along with iron bio-leaching and re-precipitation on karstified limestone. In addition to the previous-reported hydroxylbastnaesites, a (La,Nd,Y)(CO₃)F member of the bastnaesite-group associated with Al–Ni–silicates were identified, the stability of which may reflect the dependence on the source rocks and the local variations of pH-Eh. Interaction between downward percolating water and carbonate rocks seems to be a very effective mechanism for REE fluorocarbonates deposition under alkaline and reducing conditions.