Active expression of putative ammonia monooxygenase gene subunit A ( amoA ) of marine group I Crenarchaeota has been detected in the Black Sea water column. It reached its maximum, as quantified by reverse-transcription quantitative PCR, exactly at the nitrate maximum or the nitrification zone modeled in the lower oxic zone. Crenarchaeal amoA expression could explain 74.5% of the nitrite variations in the lower oxic zone. In comparison, amoA expression by γ-proteobacterial ammonia-oxidizing bacteria (AOB) showed two distinct maxima, one in the modeled nitrification zone and one in the suboxic zone. Neither the amoA expression by crenarchaea nor that by β-proteobacterial AOB was significantly elevated in this latter zone. Nitrification in the suboxic zone, most likely microaerobic in nature, was verified by ¹⁵ NO ₂ ⁻ and ¹⁵ N ¹⁵ N production in ¹⁵ NH ₄ ⁺ incubations with no measurable oxygen. It provided a direct local source of nitrite for anammox in the suboxic zone. Both ammonia-oxidizing crenarchaea and γ-proteobacterial AOB were important nitrifiers in the Black Sea and were likely coupled to anammox in indirect and direct manners respectively. Each process supplied about half of the nitrite required by anammox, based on ¹⁵ N-incubation experiments and modeled calculations. Because anammox is a major nitrogen loss in marine suboxic waters, such nitrification–anammox coupling potentially occurring also in oceanic oxygen minimum zones would act as a short circuit connecting regenerated ammonium to direct nitrogen loss, thus reducing the presumed direct contribution from deep-sea nitrate.

In lakes and reservoirs with variable water level, gas ebullition can play a substantial role in methane transport in the water column and to the atmosphere. However, measuring methane ebullition from sediment is difficult as releases are highly heterogeneous and intermittent on macro‐ and micro‐scales. In contrast to conventional gas traps and optical methods, hydroacoustic technology allows rapid scanning over large volumes of the water column synoptically to quantify gas bubble abundance. A 120‐kHz dual beam downward‐looking echosounder was used to measure the size distributions of bubbles that do not resonate at the sonar frequency. Data obtained with this sonar permit accurate calculation and evaluation of ebullition flux from the bottom. A robust relationship was established between gas volumes and backscattering cross‐section of individual bubbles in experimental conditions, and rise velocities of bubbles were precisely measured. The volume backscattering coefficient was shown to be a good gauge of the total volume of bubbles per cubic meter of water, allowing the use of a single‐beam sonar for measuring volumetric bubble concentrations. Data obtained from hydroacoustic surveys on Lake Kinneret, where gaseous methane is emitted from randomly dispersed sediment sources, indicated that ~90% of bubbles escaping from soft sediments ranged from 1.3 mm to 4.5 mm and ~50% ranged from 2.0 mm to 3.2 mm in equivalent radius. In summer‐fall 2001, the gaseous methane fluxes from hypolimnetic sediments was ~10 mmol m⁻² d⁻¹, accounting for one‐third of the observed methane accumulation in the hypolimnion. This relatively high ebullition rate could be attributed to the gradual decreasing of the mean water level in preceding years.