This study develops an active security control strategy for cyber-physical systems (CPSs) that are subject to attacks known as denial-of-service (DoS), which can target both channels from the controller to the actuator and from the controller to the sensor. Due to attack cost restrictions, the linked channels are subject to a limit on the number of continuous DoS attacks. A proactive security control method is then developed to combat two-channel DoS attacks, depending on a method for identifying IoT intrusions. Using the CICIDS dataset for attack detection, we examined the effectiveness of the Deep Convolutional Network Model (DCNM), a suggested deep learning model. The addressed CPS can be asymptotically stable against DoS assaults under the security controller's active security control technique without sacrificing control performance. Recent tests and simulations show how effective the security control strategy is active. The proposed model gives better trade-off compared to existing approaches like Deep Belief Networks (DBN), Recurrent Neural Networks (RNN), Support Vector Machines (SVM), Supervised Neural Networks (SNN) and Feed Forward Neural Networks (FNN).