Illegal, Unreported and Unregulated fishing has had a major role in the overexploitation of global fish populations. In response, international regulations have been imposed and many fisheries have been 'eco-certified' by consumer organizations, but methods for independent control of catch certificates and eco-labels are urgently needed. Here we show that, by using gene-associated single nucleotide polymorphisms, individual marine fish can be assigned back to population of origin with unprecedented high levels of precision. By applying high differentiation single nucleotide polymorphism assays, in four commercial marine fish, on a pan-European scale, we find 93–100% of individuals could be correctly assigned to origin in policy-driven case studies. We show how case-targeted single nucleotide polymorphism assays can be created and forensically validated, using a centrally maintained and publicly available database. Our results demonstrate how application of gene-associated markers will likely revolutionize origin assignment and become highly valuable tools for fighting illegal fishing and mislabelling worldwide.

To ensure food security and nutritional quality for a growing world population in the face of climate change, stagnant capture fisheries production, increasing aquaculture production and competition for natural resources, countries must be accountable for what they consume rather than what they produce. To investigate the sustainability of seafood consumption, we propose a methodology to examine the impact of seafood supply chains across national boundaries: the seafood consumption footprint. The seafood consumption footprint is expressed as the biomass of domestic and imported seafood production required to satisfy national seafood consumption, and is estimated using a multi-regional input output model. Thus, we reconstruct for the first time the global fish biomass flows in national supply chains to estimate consumption footprints at the global, country and sector levels (capture fisheries, aquaculture, distribution and processing, and reduction into fishmeal and fish oil) taking into account the biomass supply from beyond national borders.

Discarding is a common practice in fisheries. Total discards are estimated to be about 30 million tons, representing around 23% of worldwide catches. Discarding is an undesirable practice, not only because of the waste of resources, but also because of its contribution to the overexploitation of fish stocks. Several countries have already established discard bans, to different extents (e.g., Norway, Iceland, Chile, New Zealand). The EU’s landing obligation (discard ban) is a major measure of the latest reform of the Common Fisheries Policy for EU fisheries. It aims to reduce unwanted catches in EU fisheries, by incentivizing improved selectivity and restoring fish stocks to levels that can sustain the maximum production over time without harming the biodiversity and the capacity of future generations to obtain fish. However, banning discards will inevitably induce diverse short- and long-term ecological, economic, and social impacts, which may determine whether the landing obligation’s objectives will be achieved.

Motivation: The field of toxicogenomics (the application of ‘-omics’ technologies to risk assessment of compound toxicities) has expanded in the last decade, partly driven by new legislation, aimed at reducing animal testing in chemical risk assessment but mainly as a result of a paradigm change in toxicology towards the use and integration of genome wide data. Many research groups worldwide have generated large amounts of such toxicogenomics data. However, there is no centralized repository for archiving and making these data and associated tools for their analysis easily available. Results: The Data Infrastructure for Chemical Safety Assessment (diXa) is a robust and sustainable infrastructure storing toxicogenomics data. A central data warehouse is connected to a portal with links to chemical information and molecular and phenotype data. diXa is publicly available through a user-friendly web interface. New data can be readily deposited into diXa using guidelines and templates available online. Analysis descriptions and tools for interrogating the data are available via the diXa portal. Availability and implementation:http://www.dixa-fp7.eu Contact:d.hendrickx@maastrichtuniversity.nl; info@dixa-fp7.eu Supplementary information: Supplementary data are available at Bioinformatics online.

We present a graph-based object model that may be used as a uniform framework for direct manipulation of multimedia information. After an introduction motivating the need for abstraction and structuring mechanisms in hypermedia systems, we introduce the data model and the notion of perspective, a form of data abstraction that acts as a user interface to the system, providing control over the visibility of the objects and their properties. A perspective is defined to include an intension and an extension. The intension is defined in terms of a pattern, a subgraph of the schema graph, and the extension is the set of pattern-matching instances. Perspectives, as well as database schema and instances, are graph structures that can be manipulated in various ways. The resulting uniform approach is well suited to a visual interface. A visual interface for complex information systems provides high semantic power, thus exploiting the semantic expressibility of the underlying data model, while maintaining ease of interaction with the system. In this way, we reach the goal of decreasing cognitive load on the user, with the additional advantage of always maintaining the same interaction style. We present a visual retrieval environment that effectively combines filtering, browsing, and navigation to provide an integrated view of the retrieval problem. Design and implementation issues are outlined for MORE (Multimedia Object Retrieval Environment), a prototype system relying on the proposed model. The focus is on the main user interface functionalities, and actual interaction sessions are presented including schema creation, information loading, and information retrieval.