ALLISSON DANTAS DE OLIVEIRA

Dr. ALLISSON DANTAS DE OLIVEIRA

orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 April 2017 in JMIR Research Protocols
Verified
Journal Article
Open access
AOALLISSON DANTAS DE OLIVEIRA
ALLISSON DANTAS DE OLIVEIRA
CPClara Prats
Clara Prats
MEMateu Espasa
Mateu Espasa
FSFrancesc Zarzuela Serrat
Francesc Zarzuela Serrat
CSCristina Montañola Sales
Cristina Montañola Sales
JAJones Albuquerque
Jones Albuquerque
Malaria is a public health problem that affects remote areas worldwide. Climate change has contributed to the problem by allowing for the survival of Anopheles in previously uninhabited areas. As such, several groups have made developing news systems for the automated diagnosis of malaria a priority. The objective of this study was to develop a new, automated, mobile device-based diagnostic system for malaria. The system uses Giemsa-stained peripheral blood samples combined with light microscopy to identify the Plasmodium falciparum species in the ring stage of development. The system uses image processing and artificial intelligence techniques as well as a known face detection algorithm to identify Plasmodium parasites. The algorithm is based on integral image and haar-like features concepts, and makes use of weak classifiers with adaptive boosting learning. The search scope of the learning algorithm is reduced in the preprocessing step by removing the background around blood cells. As a proof of concept experiment, the tool was used on 555 malaria-positive and 777 malaria-negative previously-made slides. The accuracy of the system was, on average, 91%, meaning that for every 100 parasite-infected samples, 91 were identified correctly. Accessibility barriers of low-resource countries can be addressed with low-cost diagnostic tools. Our system, developed for mobile devices (mobile phones and tablets), addresses this by enabling access to health centers in remote communities, and importantly, not depending on extensive malaria expertise or expensive diagnostic detection equipment.

CMCarles Rubio Maturana
Carles Rubio Maturana
AOALLISSON DANTAS DE OLIVEIRA
ALLISSON DANTAS DE OLIVEIRA
FZFrancesc Zarzuela
Francesc Zarzuela
AMAlejandro Mediavilla
Alejandro Mediavilla
PMPatricia Martínez-Vallejo
Patricia Martínez-Vallejo
JJJoan Joseph-Munné
Joan Joseph-Munné
The gold standard diagnosis for malaria is the microscopic visualization of blood smears to identify Plasmodium parasites, although it is an expert-dependent technique and could trigger diagnostic errors. Artificial intelligence (AI) tools based on digital image analysis were postulated as a suitable supportive alternative for automated malaria diagnosis. A diagnostic evaluation of the iMAGING AI-based system was conducted in the reference laboratory of the International Health Unit Drassanes-Vall d’Hebron in Barcelona, Spain. iMAGING is an automated device for the diagnosis of malaria by using artificial intelligence image analysis tools and a robotized microscope. A total of 54 Giemsa-stained thick blood smear samples from travelers and migrants coming from endemic areas were employed and analyzed to determine the presence/absence of Plasmodium parasites. AI diagnostic results were compared with expert light microscopy gold standard method results. The AI system shows 81.25% sensitivity and 92.11% specificity when compared with the conventional light microscopy gold standard method. Overall, 48/54 (88.89%) samples were correctly identified [13/16 (81.25%) as positives and 35/38 (92.11%) as negatives]. The mean time of the AI system to determine a positive malaria diagnosis was 3 min and 48 s, with an average of 7.38 FoV analyzed per sample. Statistical analyses showed the Kappa Index = 0.721, demonstrating a satisfactory correlation between the gold standard diagnostic method and iMAGING results. The AI system demonstrated reliable results for malaria diagnosis in a reference laboratory in Barcelona. Validation in malaria-endemic regions will be the next step to evaluate its potential in resource-poor settings.

21 June 2024 in PLOS ONE
Verified
Journal Article
Open access
PDF file
AOALLISSON DANTAS DE OLIVEIRA
ALLISSON DANTAS DE OLIVEIRA
CMCarles Rubio Maturana
Carles Rubio Maturana
FSFrancesc Zarzuela Serrat
Francesc Zarzuela Serrat
BCBruno Motta Carvalho
Bruno Motta Carvalho
ESElena Sulleiro
Elena Sulleiro
DLDaniel López-Codina
Daniel López-Codina
In a clinical context, conventional optical microscopy is commonly used for the visualization of biological samples for diagnosis. However, the availability of molecular techniques and rapid diagnostic tests are reducing the use of conventional microscopy, and consequently the number of experienced professionals starts to decrease. Moreover, the continuous visualization during long periods of time through an optical microscope could affect the final diagnosis results due to induced human errors and fatigue. Therefore, microscopy automation is a challenge to be achieved and address this problem. The aim of the study is to develop a low-cost automated system for the visualization of microbiological/parasitological samples by using a conventional optical microscope, and specially designed for its implementation in resource-poor settings laboratories. A 3D-prototype to automate the majority of conventional optical microscopes was designed. Pieces were built with 3D-printing technology and polylactic acid biodegradable material with Tinkercad/Ultimaker Cura 5.1 slicing softwares. The system’s components were divided into three subgroups: microscope stage pieces, storage/autofocus-pieces, and smartphone pieces. The prototype is based on servo motors, controlled by Arduino open-source electronic platform, to emulate the X-Y and auto-focus (Z) movements of the microscope. An average time of 27.00 ± 2.58 seconds is required to auto-focus a single FoV. Auto-focus evaluation demonstrates a mean average maximum Laplacian value of 11.83 with tested images. The whole automation process is controlled by a smartphone device, which is responsible for acquiring images for further diagnosis via convolutional neural networks. The prototype is specially designed for resource-poor settings, where microscopy diagnosis is still a routine process. The coalescence between convolutional neural network predictive models and the automation of the movements of a conventional optical microscope confer the system a wide range of image-based diagnosis applications. The accessibility of the system could help improve diagnostics and provide new tools to laboratories worldwide.

4 February 2018
Verified
Book Chapter
Closed access
PDF file
AOALLISSON DANTAS DE OLIVEIRA
ALLISSON DANTAS DE OLIVEIRA
BCBruno M. Carvalho
Bruno M. Carvalho
CPClara Prats
Clara Prats
MEMateu Espasa
Mateu Espasa
JPJordi Gomez i Prat
Jordi Gomez i Prat
JAJones Albuquerque
Jones Albuquerque

13 May 2013
Verified
Conference Paper
Open access
PDF file
AOALLISSON DANTAS DE OLIVEIRA
ALLISSON DANTAS DE OLIVEIRA
GCGiordano Cabral
Giordano Cabral
DLD. López
D. López
CFCaetano Firmo
Caetano Firmo
FSF. Zarzuela Serrat
F. Zarzuela Serrat
JAJ. Albuquerque
J. Albuquerque

6 April 2026 in SSRN Electronic Journal
Verified
Preprint
Open access
Victor Lopez de RiojaVictor Lopez de Rioja
Victor Lopez de Rioja
AOALLISSON DANTAS DE OLIVEIRA
ALLISSON DANTAS DE OLIVEIRA
CPClara Prats
Clara Prats
SPSee Pdf
See Pdf
Background: Herpangina and hand, foot, and mouth disease (HFMD) are common paediatric enterovirus syndromes, but long-term European primary care data are very scarceMethods: Primary care electronic health records from the public healthcare system in Catalonia (Spain) were retrospectively analysed for academic years 2014-2015 to 2024-2025 using ICD-10 codes. Incidence trends, demographic patterns, peak timing, and correlations between successive seasonal peaks were analysed. A SEIR model was fitted to seasonal outbreaks and the effective reproduction number was estimated.Findings: Among children aged <5 years, 137,460 diagnoses were identified, including 54,060 herpangina and 83,400 HFMD. Both syndromes showed recurrent bimodal seasonality aligned with school holidays. Incidence dropped in 2020 and rebounded from autumn 2021, particularly for HFMD. In pre-pandemic years, spring herpangina peak occurred about 1·5 weeks later per 1-week Easter delay. Peak magnitudes alternated: HFMD typically showed larger autumn than spring peaks, whereas herpangina peaks were more similar; negative correlations at 6-month and 1-year lags were consistent with susceptible depletion and replenishment. Most diagnoses occurred at ages 1-2 years, with a transient shift towards 3-4-year-old children in the first post-pandemic season.Interpretation: In this temperate European setting, herpangina and HFMD dynamics were strongly shaped by the school calendar and inter-seasonal susceptible dynamics, with recurrent peak timing and alternating peak magnitudes. Long-term primary care surveillance can improve earlier interpretation of atypical transmission patterns and improve paediatric seasonal preparedness when virological surveillance is limited.