Alina Fominichenko Alina Fominichenko

Dr. Alina Fominichenko Alina Fominichenko


Research Focus & Metrics

Academic Career Length

3Years (2024-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 January 2025 in Pharmaceuticals
Verified
Journal Article
Open access
PDF file
KSKostiantyn Shabelnyk
Kostiantyn Shabelnyk
AFAlina Fominichenko Alina Fominichenko
Alina Fominichenko Alina Fominichenko
Antypenko OleksiiAntypenko Oleksii
Antypenko Oleksii
OGOleksandr Gaponov
Oleksandr Gaponov
SKSvitlana Koptieva
Svitlana Koptieva
Oleksandr KamyshnyiOleksandr Kamyshnyi
Oleksandr Kamyshnyi
Background: In the era of resistance, the design and search for new “small” molecules with a narrow spectrum of activity that target a protein or enzyme specific to a certain bacterium with high selectivity and minimal side effects remains an urgent problem of medicinal chemistry. In this regard, we developed and successfully implemented a strategy for the search for new hybrid molecules, namely, the not broadly known [2-(3-R-1H-[1,2,4]-triazol-5-yl)phenyl]amines. They can act as “building blocks” and allow for the introduction of certain structural motifs into the desired final products in order to enhance the antistaphylococcal effect. Methods: The “one-pot” synthesis of the latter is based on the conversion of substituted 4-hydrazinoquinazolines or substituted 2-aminobenzonitriles and carboxylic acid derivatives to the target products. The possible molecular mechanism of the synthesized compounds (DNA gyrase inhibitors) was investigated and discussed using molecular docking, and their further study for antistaphylococcal activity was substantiated. Results: A significant part of the obtained compounds showed high antibacterial activity against Staphylococcus aureus (MIC: 10.1–62.4 µM) and 5-bromo-2-(3-(furan-3-yl)-1H-1,2,4-triazol-5-yl)aniline and 5-fluoro-2-(3-(thiophen-3-yl)-1H-1,2,4-triazol-5-yl)aniline, with MICs of 5.2 and 6.1 µM, respectively, approaching the strength of the effect of the reference drug, “Ciprofloxacin” (MIC: 4.7 µM). The conducted SAR and ADME analyses confirm the prospects of the further structural modification of these compounds. The obtained [2-(3-R-1H-[1,2,4]-triazol-5-yl)phenyl]amines reveal significant antimicrobial activity and deserve further structural modification and detailed study as effective antistaphylococcal agents. The SAR analysis revealed that the presence of a cycloalkyl or electron-rich heterocyclic fragment in the third position of the triazole ring was essential for the antibacterial activity of the obtained compounds. At the same time, the introduction of a methyl group into the aniline moiety led to an enhancement of activity. The introduction of halogen into the aniline fragment has an ambiguous effect on the level of antistaphylococcal activity and depends on the nature of the substituent in the third position. Conclusions: Obtained [2-(3-R-1H-[1,2,4]-triazol-5-yl)phenyl]amines reveal significant antistaphylococcal activity and deserve for further detailed study as effective antibacterial agents.

25 November 2024 in Journal of Fungi
Verified
Journal Article
Open access
PDF file
LALyudmyla Antypenko
Lyudmyla Antypenko
Antypenko OleksiiAntypenko Oleksii
Antypenko Oleksii
AFAlina Fominichenko Alina Fominichenko
Alina Fominichenko Alina Fominichenko
IKIryna Karnaukh
Iryna Karnaukh
Serhii Sergiy KovalenkoSerhii Sergiy Kovalenko
Serhii Sergiy Kovalenko
MAMieko Arisawa
Mieko Arisawa
Nakaseomyces glabrata (Candida glabrata), the second most prevalent Candida pathogen globally, has emerged as a major clinical threat due to its ability to develop high-level azole resistance. In this study, two new 5,6-dihydrotetrazolo[1,5-c]quinazoline derivatives (c11 and c12) were synthesized and characterized using IR, LC-MS, 1H, and 13C NMR spectra. Along with 13 previously reported analogues, these compounds underwent in vitro antifungal testing against clinical N. glabrata isolates using a serial dilution method (0.125–64 mg/L). Remarkably, compounds c5 and c1 exhibited potent antifungal activity, with minimum inhibitory concentrations of 0.37 μM and 0.47 μM, respectively—about a 20-fold improvement in μM concentration over standard drugs like amphotericin B, caspofungin, and micafungin. A detailed structure–activity relationship analysis revealed crucial molecular features enhancing antifungal potency. Extensive molecular docking studies across 18 protein targets explored potential binding pockets and affinities of the lead compounds. A robust 3D-QSAR model, incorporating molecular descriptors Mor26m and Mor29e, displayed good predictive ability for antifungal activity. In silico predictions indicated an absence of herbicidal effect, negligible environmental toxicity (to honeybees, avian species, and aquatic organisms), and mild human toxicity concerns for these compounds. This comprehensive approach aims to develop novel and effective antifungal compounds against the clinically relevant pathogen N. glabrata.

16 December 2024 in Preprints.org
Verified
Preprint
Open access
PDF file
KSKostiantyn Shabelnyk
Kostiantyn Shabelnyk
AFAlina Fominichenko Alina Fominichenko
Alina Fominichenko Alina Fominichenko
Antypenko OleksiiAntypenko Oleksii
Antypenko Oleksii
OGOleksandr Gaponov
Oleksandr Gaponov
SKSvitlana Koptieva
Svitlana Koptieva
Oleksandr KamyshnyiOleksandr Kamyshnyi
Oleksandr Kamyshnyi
Background: In the era of resistance, the design and search for new "small" molecules with a narrow spectrum of activity, which would target a protein or enzyme specific to a certain bacterium, with high selectivity and minimal side effects, remains an urgent problem of medicinal chemistry. In this regard, we have developed and successfully implemented a strategy for the search for new hybrid molecules, namely the not broadly known [2-(3-R-1H-[1,2,4]-triazol-5-yl)phenyl]amines. They can act as "building blocks" and allow the introduction of certain structural motifs into the desired final products in order to enhance the anti-staphylococcal effect. Methods: "One-pot" synthesis of the latter is based on the conversion of substituted 4-hydrazinoquinazolines or substituted 2-aminobenzonitriles and carboxylic acid derivatives to the target products. The purity, and structure of the synthesized compounds were proven using elemental analysis, LC-MS, 1H and 13C NMR spectra, and X-ray diffraction. The possible molecular mechanism of the synthesized compounds (DNA gyrase inhibitors) was investigated and discussed by molecular docking, and their further study for anti-staphylococcal activity was substantiated. Results. A significant part of the obtained compounds showed high antibacterial activity against Staphylococcus aureus (MIC 10.1-62.4 µM), and 5-bromo-2-(3-(furan-3-yl)-1H-1,2,4-triazol-5-yl)aniline and 5-fluoro-2-(3-(thiophen-3-yl)-1H-1,2,4-triazol-5-yl)aniline with MICs of 5.2 and 6.1 µM, respectively, approaching the strength of the effect to the reference drug "Ciprofloxacin" (MIC 4.7 µM). The conducted SAR- and ADME-analysis confirm the prospects of further structural modification of these compounds. Conclusions: Obtained [2-(3-R-1H-[1,2,4]-triazol-5-yl)phenyl]amines reveal significant antimicrobial activity and deserve further structural modification and detailed study as effective anti-staphylococcal agents.

25 October 2024 in Preprints.org
Verified
Preprint
Open access
PDF file
LALyudmyla Antypenko
Lyudmyla Antypenko
Antypenko OleksiiAntypenko Oleksii
Antypenko Oleksii
AFAlina Fominichenko Alina Fominichenko
Alina Fominichenko Alina Fominichenko
IKIryna Karnaukh
Iryna Karnaukh
Serhii Sergiy KovalenkoSerhii Sergiy Kovalenko
Serhii Sergiy Kovalenko
MAMieko Arisawa
Mieko Arisawa
Candida glabrata (Nakaseomyces glabratus), the second most prevalent Candida pathogen globally, has emerged as a major clinical threat due to its ability to develop high-level azole resistance. In this study, two new 5,6-dihydrotetrazolo[1,5-c]quinazoline derivatives (c11 and c12) were synthesized and characterized using IR, LC-MS, 1Н and 13C NMR spectra. Along with 13 previously reported analogues, these compounds underwent in vitro antifungal testing against clinical C. glabrata isolates using a serial dilution method (0.125-64 mg/L). Remarkably, compounds c5 and c1 exhibited potent antifungal activity, with minimum inhibitory concentrations of 0.37 μM and 0.47 μM, respectively – about 20-fold improvement over standard drugs like amphotericin B, caspofungin, and micafungin. A detailed structure-activity relationship analysis revealed crucial molecular features enhancing antifungal potency. Extensive molecular docking studies across 18 protein targets explored potential binding pockets and affinities of the lead compounds. A robust 3D-QSAR model, incorporating molecular descriptors Mor26m and Mor29e, displayed good predictive ability for antifungal activity. In silico predictions indicated an absence of herbicidal effect, negligible environmental toxicity (to honeybees, avian species, and aquatic organisms), and mild human toxicity concerns for these compounds. This comprehensive approach aims to develop novel and effective antifungal compounds against the clinically relevant pathogen C. glabrata.