Aaron Hakim

Dr. Aaron Hakim

orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 April 2013 in Journal of Biological Chemistry
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Journal Article
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AHAaron Hakim
Aaron Hakim
JNJennifer B. Nguyen
Jennifer B. Nguyen
KBKoli Basu
Koli Basu
DZDarren F. Zhu
Darren F. Zhu
DTDurga Thakral
Durga Thakral
WMWuyi Meng
Wuyi Meng
Antifreeze proteins (AFPs) help some organisms resist freezing by binding to ice crystals and inhibiting their growth. The molecular basis for how these proteins recognize and bind ice is not well understood. The longhorn beetle Rhagium inquisitor can supercool to below −25 °C, in part by synthesizing the most potent antifreeze protein studied thus far (RiAFP). We report the crystal structure of the 13-kDa RiAFP, determined at 1.21 Å resolution using direct methods. The structure, which contains 1,914 nonhydrogen protein atoms in the asymmetric unit, is the largest determined ab initio without heavy atoms. It reveals a compressed β-solenoid fold in which the top and bottom sheets are held together by a silk-like interdigitation of short side chains. RiAFP is perhaps the most regular structure yet observed. It is a second independently evolved AFP type in beetles. The two beetle AFPs have in common an extremely flat ice-binding surface comprising regular outward-projecting parallel arrays of threonine residues. The more active, wider RiAFP has four (rather than two) of these arrays between which the crystal structure shows the presence of ice-like waters. Molecular dynamics simulations independently reproduce the locations of these ordered crystallographic waters and predict additional waters that together provide an extensive view of the AFP interaction with ice. By matching several planes of hexagonal ice, these waters may help freeze the AFP to the ice surface, thus providing the molecular basis of ice binding.

1 June 2019 in Journal of Hepatology
Verified
Journal Article
Closed access
AHAaron Hakim
Aaron Hakim
XZXuchen Zhang
Xuchen Zhang
ADAngela DeLisle
Angela DeLisle
EOElif A. Oral
Elif A. Oral
DDDaniel Dykas
Daniel Dykas
SVSilvia Vilarinho
Silvia Vilarinho

6 June 2017 in JAMA
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Journal Article
Closed access
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AHAaron Hakim
Aaron Hakim
JRJoseph S. Ross
Joseph S. Ross
This Viewpoint explores why biosimilars for chronic diseases, the largest category of biological therapies, are unlikely to yield cost savings.

9 August 2023 in EBioMedicine
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Journal Article
Open access
MZMelanie Zheng
Melanie Zheng
AHAaron Hakim
Aaron Hakim
CKChigoziri Konkwo
Chigoziri Konkwo
ADAimee M. Deaton
Aimee M. Deaton
LWLucas D. Ward
Lucas D. Ward
SVSilvia Vilarinho
Silvia Vilarinho
Whole-exome sequencing (WES) is an effective tool for diagnosis in patients who remain undiagnosed despite a comprehensive clinical work-up. While WES is being used increasingly in pediatrics and oncology, it remains underutilized in non-oncological adult medicine, including in patients with liver disease, in part based on the faulty premise that adults are unlikely to harbor rare genetic variants with large effect size. Here, we aim to assess the burden of rare genetic variants underlying liver disease in adults at two major tertiary referral academic medical centers. WES analysis paired with comprehensive clinical evaluation was performed in fifty-two adult patients with liver disease of unknown etiology evaluated at two US tertiary academic health care centers. Exome analysis uncovered a definitive or presumed diagnosis in 33% of patients (17/52) providing insight into their disease pathogenesis, with most of these patients (12/17) not having a known family history of liver disease. Our data shows that over two-thirds of undiagnosed liver disease patients attaining a genetic diagnosis were being evaluated for cholestasis or hepatic steatosis of unknown etiology. This study reveals an underappreciated incidence and spectrum of genetic diseases presenting in adulthood and underscores the clinical value of incorporating exome sequencing in the evaluation and management of adults with liver disease of unknown etiology. S.V. is supported by the NIH/NIDDK (K08 DK113109 and R01 DK131033-01A1) and the Doris Duke Charitable Foundation Grant #2019081. This work was supported in part by NIH-funded Yale Liver Center, P30 DK34989.

1 January 2024 in Annals of Internal Medicine
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Journal Article
Closed access
AHAaron Hakim
Aaron Hakim
ZFZachary P. Fricker
Zachary P. Fricker
JFJoseph Feuerstein
Joseph Feuerstein
HFHarrison W. Farber
Harrison W. Farber
NSNoah C. Schoenberg
Noah C. Schoenberg

1 February 2020 in International Journal of Infectious Diseases
Verified
Journal Article
Open access
AHAaron Hakim
Aaron Hakim
HBHannan Braun
Hannan Braun
DTDavid Thornton
David Thornton
JSJudith Strymish
Judith Strymish
There is a paucity of literature on the use of dalbavancin, a long-acting lipoglycopeptide, in infective endocarditis. Existing case reports have investigated dalbavancin in endocarditis as a sequential treatment after clearance of bacteria from the bloodstream with conventional therapy. A 27-year-old female who injects drugs presented with fever and pleuritic chest pain and was found to have methicillin-sensitive Staphylococcus aureus tricuspid-valve endocarditis with septic pulmonary emboli. Given non-adherence with conventional therapy, she was successfully treated off-label with once-weekly dalbavancin infusions in an outpatient setting. We summarize the patient's clinical course and review published reports of endocarditis treated with dalbavancin in the peer-reviewed literature. Our case supports further investigation of outpatient dalbavancin infusions as a reasonable therapeutic alternative to standard treatment with daily intravenous therapy for serious staphylococcal infections among patients who have difficulty engaging with conventional therapy.