Shyam Raghavan

Dr. Shyam Raghavan

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 July 2020 in Journal of Cutaneous Pathology
Verified
Journal Article
Closed access
PDF file
SRShyam Raghavan
Shyam Raghavan
JWJennifer Y. Wang
Jennifer Y. Wang
SKShirley Kwok
Shirley Kwok
KRKerri E. Rieger
Kerri E. Rieger
RNRoberto A. Novoa
Roberto A. Novoa
RBRyanne A. Brown
Ryanne A. Brown

3 January 2020 in Laboratory Investigation
Verified
Journal Article
Closed access
PDF file
SRShyam Raghavan
Shyam Raghavan
SPSandra Peternel
Sandra Peternel
TMThaddeus W. Mully
Thaddeus W. Mully
JNJeffrey P. North
Jeffrey P. North
LPLaura B. Pincus
Laura B. Pincus
IYIwei Yeh
Iwei Yeh

15 July 2022 in Science Advances
Verified
Journal Article
Open access
CUClint M. Upchurch
Clint M. Upchurch
SYScott Yeudall
Scott Yeudall
CPCaitlin M. Pavelec
Caitlin M. Pavelec
DMDennis Merk
Dennis Merk
JGJan Greulich
Jan Greulich
NLNorbert Leitinger
Norbert Leitinger
Oxidized phosphatidylcholines (OxPCs) are implicated in chronic tissue damage. Hyperlipidemic LDL-R-–deficient mice transgenic for an OxPC-recognizing IgM fragment (scFv-E06) are protected against nonalcoholic fatty liver disease (NAFLD). To examine the effect of OxPC elimination at different stages of NAFLD progression, we used cre-dependent, adeno-associated virus serotype 8–mediated expression of the single-chain variable fragment of E06 (AAV8-scFv-E06) in hepatocytes of albumin-cre mice. AAV8-induced expression of scFv-E06 at the start of FPC diet protected mice from developing hepatic steatosis. Independently, expression of scFv-E06 in mice with established steatosis prevented the progression to hepatic fibrosis. Mass spectrometry–based oxophospho-lipidomics identified individual OxPC species that were reduced by scFv-E06 expression. In vitro, identified OxPC species dysregulated mitochondrial metabolism and gene expression in hepatocytes and hepatic stellate cells. We demonstrate that individual OxPC species independently affect disease initiation and progression from hepatic steatosis to steatohepatitis, and that AAV-mediated expression of scFv-E06 is an effective therapeutic intervention.

12 February 2020 in Laboratory Investigation
Verified
Journal Article
Closed access
LALindsay Alpert
Lindsay Alpert
RARam Al-Sabti
Ram Al-Sabti
RGRondell P. Graham
Rondell P. Graham
RGRaul S. Gonzalez
Raul S. Gonzalez
XZXuefeng Zhang
Xuefeng Zhang
MBMary P. Bronner
Mary P. Bronner

18 July 2020 in Journal of Cutaneous Pathology
Verified
Journal Article
Closed access
PDF file
SRShyam Raghavan
Shyam Raghavan
JWJennifer Y. Wang
Jennifer Y. Wang
ATAngus Toland
Angus Toland
CBCharles D. Bangs
Charles D. Bangs
KRKerri E. Rieger
Kerri E. Rieger
RBRyanne A. Brown
Ryanne A. Brown

19 June 2020 in JNCI Cancer Spectrum
Verified
Journal Article
Open access
PDF file
AAAser Abrha
Aser Abrha
NSNavika D Shukla
Navika D Shukla
RHRachel Hodan
Rachel Hodan
TLTeri Longacre
Teri Longacre
SRShyam Raghavan
Shyam Raghavan
SHSigurdis Haraldsdottir
Sigurdis Haraldsdottir
In light of recent Food and Drug Administration (FDA) approval of immune checkpoint inhibitors for mismatch repair deficient (dMMR) malignancies, identifying patients with dMMR malignancies has become increasingly important. Although screening for dMMR in colorectal cancer (CRC) is recommended, it is less common for extracolonic gastrointestinal (GI) malignancies. At Stanford Comprehensive Cancer Institute (SCCI), all GI malignancies have been screened for dMMR via immunohistochemistry since January 2016. In this study, we conducted a retrospective review of all patients with GI malignancies screened for dMMR between January 2016 and December 2017. Tumor sequencing was performed on cases negative for germline pathogenic variants where tumor material was available. A total of 1425 consecutive GI malignancies were screened for dMMR at SCCI during the study period, and 1374 were included for analysis. dMMR was detected in 7.2% of all GI malignancies. We detected the highest prevalence of dMMR in gastric (15 of 150, 10.0%) followed by colorectal (63 of 694, 9.1%), pancreatic (13 of 244, 5.3%), and gastroesophageal malignancy (6 of 132, 4.5%) patients. Lynch syndrome was the most common etiology for dMMR in colorectal cancer (41.5%), double somatic (confirmed or possible) pathogenic variants the most common etiology in pancreatic cancer (44.4%), and somatic MLH1 hypermethylation the most common etiology in gastric (73.3%) and gastroesophageal cancer (83.3%). Given the relatively high incidence of dMMR in GI malignancies, we recommend screening all GI malignancies. Our results suggest that although a rare occurrence, double somatic pathogenic variants may be a biologically significant pathway causing dMMR in pancreatic cancer.