Tomasz Marciniak

Dr. Tomasz Marciniak

Institute of Telecommunications and Computer Science, University of Science and Technology (UTP) in Bydgoszcz, 85-796 Bydgoszcz, Poland
orcid

Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 March 2022 in Scientific Reports
Verified
Journal Article
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Sylwester Michał KloskaSylwester Michał Kloska
Sylwester Michał Kloska
KPKrzysztof Pałczyński
Krzysztof Pałczyński
TMTomasz Marciniak
Tomasz Marciniak
TTTomasz Talaśka
Tomasz Talaśka
MMMarissa Miller
Marissa Miller
Tadeusz A. WysockiTadeusz A. Wysocki
Tadeusz A. Wysocki
Due to its role in maintaining the proper functioning of the cell, the pentose phosphate pathway (PPP) is one of the most important metabolic pathways. It is responsible for regulating the concentration of simple sugars and provides precursors for the synthesis of amino acids and nucleotides. In addition, it plays a critical role in maintaining an adequate level of NADPH, which is necessary for the cell to fight oxidative stress. These reasons prompted the authors to develop a computational model, based on queueing theory, capable of simulating changes in PPP metabolites’ concentrations. The model has been validated with empirical data from tumor cells. The obtained results prove the stability and accuracy of the model. By applying queueing theory, this model can be further expanded to include successive metabolic pathways. The use of the model may accelerate research on new drugs, reduce drug costs, and reduce the reliance on laboratory animals necessary for this type of research on which new methods are tested.

6 September 2024 in Electronics
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Izabela RojekIzabela Rojek
Izabela Rojek
TMTomasz Marciniak
Tomasz Marciniak
Dariusz MikołajewskiDariusz Mikołajewski
Dariusz Mikołajewski
Digital twins (DTs) provide accurate, data-driven, real-time modeling to create a digital representation of the physical world. The integration of new technologies, such as virtual/mixed reality, artificial intelligence, and DTs, enables modeling and research into ways to achieve better sustainability, greater efficiency, and improved safety in Industry 4.0/5.0 technologies. This paper discusses concepts, limitations, future trends, and potential research directions to provide the infrastructure and underlying intelligence for large-scale semi-automated DT building environments. Grouping these technologies along these lines allows for a better consideration of their individual risk factors and use of available data, resulting in an approach to generate holistic virtual representations (DTs) to facilitate predictive analyses in industrial practices. Artificial intelligence-based DTs are becoming a new tool for monitoring, simulating, and optimizing systems, and the widespread implementation and mastery of this technology will lead to significant improvements in performance, reliability, and profitability. Despite advances, the aforementioned technology still requires research, improvement, and investment. This article’s contribution is a concept that, if adopted instead of the traditional approach, can become standard practice rather than an advanced operation and can accelerate this development.

16 March 2021 in Bioinformatics
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Sylwester Michał KloskaSylwester Michał Kloska
Sylwester Michał Kloska
KPKrzysztof Pałczyński
Krzysztof Pałczyński
TMTomasz Marciniak
Tomasz Marciniak
TTTomasz Talaśka
Tomasz Talaśka
MNMarissa Nitz
Marissa Nitz
Tadeusz A. WysockiTadeusz A. Wysocki
Tadeusz A. Wysocki
Queueing theory can be effective in simulating biochemical reactions taking place in living cells, and the article paves a step toward development of a comprehensive model of cell metabolism. Such a model could help to accelerate and reduce costs for developing and testing investigational drugs reducing number of laboratory animals needed to evaluate drugs. The article presents a Krebs cycle model based on queueing theory. The model allows for tracking of metabolites concentration changes in real time. To validate the model, a drug-induced inhibition affecting activity of enzymes involved in Krebs cycle was simulated and compared with available experimental data. The source code is freely available for download at https://github.com/UTP-WTIiE/KrebsCycleUsingQueueingTheory, implemented in C# supported in Linux or MS Windows. Supplementary data are available at Bioinformatics online.

25 May 2023 in Mathematics in Computer Science
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AFAdam Flizikowski
Adam Flizikowski
TMTomasz Marciniak
Tomasz Marciniak
TWTadeusz A. Wysocki
Tadeusz A. Wysocki
OOOlutayo Oyerinde
Olutayo Oyerinde
In this paper overview of recent selected works that deal with novel directions in which Non orthogonal multiple access (NOMA) research is progressing is presented. These include the cell-free NOMA, deep learning extensions and optimizations of NOMA, energy optimization and task offloading with mobile-edge computing, NOMA and physical layer security, as well as virtualization, centralized-RAN aspects. All these are hot issues towards deployments of NOMA in the designs of beyond 5G and 6th generation (6G) wireless communication networks. Even though 3rd Generation Partnership Project (3GPP) has not yet made the decision regarding which NOMA techniques should be adopted, it seems like researchers already indicate clearly that NOMA has important place in the future network deployments based on ultra-density, novel 5G use-cases (massive machine type communications, ultra-reliable low latency communications). This paper highlights the most promising directions for NOMA research. The paper is summarized with necessary steps that are required to get NOMA into practical usage.

3 July 2024 in Applied Energy
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FMFrancisco Javier Maldonado-Carrascosa
Francisco Javier Maldonado-Carrascosa
Sebastián García GalánSebastián García Galán
Sebastián García Galán
Manuel Valverde IbáñezManuel Valverde Ibáñez
Manuel Valverde Ibáñez
TMTomasz Marciniak
Tomasz Marciniak
MSMałgorzata Szczerska
Małgorzata Szczerska
NRNicolás Ruiz-Reyes
Nicolás Ruiz-Reyes

2 September 2023 in Scientific Reports
Verified
Journal Article
Open access
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Sylwester Michał KloskaSylwester Michał Kloska
Sylwester Michał Kloska
KPKrzysztof Pałczyński
Krzysztof Pałczyński
TMTomasz Marciniak
Tomasz Marciniak
TTTomasz Talaśka
Tomasz Talaśka
BWBeata J. Wysocki
Beata J. Wysocki
TWTadeusz A. Wysocki
Tadeusz A. Wysocki
The metabolic network of a living cell is highly intricate and involves complex interactions between various pathways. In this study, we propose a computational model that integrates glycolysis, the pentose phosphate pathway (PPP), the fatty acids beta-oxidation, and the tricarboxylic acid cycle (TCA cycle) using queueing theory. The model utilizes literature data on metabolite concentrations and enzyme kinetic constants to calculate the probabilities of individual reactions occurring on a microscopic scale, which can be viewed as the reaction rates on a macroscopic scale. However, it should be noted that the model has some limitations, including not accounting for all the reactions in which the metabolites are involved. Therefore, a genetic algorithm (GA) was used to estimate the impact of these external processes. Despite these limitations, our model achieved high accuracy and stability, providing real-time observation of changes in metabolite concentrations. This type of model can help in better understanding the mechanisms of biochemical reactions in cells, which can ultimately contribute to the prevention and treatment of aging, cancer, metabolic diseases, and neurodegenerative disorders.